On Thu, 5 Mar 2009, Benjamin Tyner wrote:
Hi
Nice to hear from you Ryan. I also do not have the capability to debug on
windows; however, there is a chance that the behavior you are seeing is
caused by the following bug noted in my thesis (available on ProQuest; email
me if you don't have acc
Hi,
I have an S4 class that inherits from "array" but does not add generic
implementations of the "[" method.
A simplified example is:
setClass("fooarray", contains="array")
If I create a "fooarray" object and subset it with a one-dimensional
index vector, the return value is of class "fooarray
Hi
Nice to hear from you Ryan. I also do not have the capability to debug
on windows; however, there is a chance that the behavior you are seeing
is caused by the following bug noted in my thesis (available on
ProQuest; email me if you don't have access):
"When lambda = 0 there are no local
Excellent, Ben! Thanks!!
On Mar 5, 2009, at 8:24 PM, Benjamin Tyner wrote:
Hi
Nice to hear from you Ryan. I also do not have the capability to
debug on windows; however, there is a chance that the behavior you
are seeing is caused by the following bug noted in my thesis
(available on P
That is true - good point.
lp1 <- predict(loess(y ~ x, degree=0))
lp2 <- predict(loess(y ~ x, degree=0,
control=loess.control(surface="direct")))
sort(abs(lp1-lp2))
It appears that the interpolating fit is correct at the vertices. I
know when degree>=1, the interpolation uses the slopes of
On 05/03/2009 9:42 AM, Ryan Hafen wrote:
On Mar 5, 2009, at 7:59 AM, Prof Brian Ripley wrote:
On Thu, 5 Mar 2009, Peter Dalgaard wrote:
Prof Brian Ripley wrote:
Undortunately the example is random, so not really reproducible
(and I
see nothing wrong on my Mac). However, Linux valgrind on R
On 05/03/2009 9:55 AM, pfar...@mat.puc.cl wrote:
Hi, my name is Paula. Im trying to learn how to build an R package in
Windows XP using a simple example which includes a C source code. The
foo.c file is located in mypkg/src/foo.c.
I used the command Rcmd build --force --binary [pkgpath]. The pr
On 05/03/2009 12:29 PM, Ben Bryant wrote:
Greetings -
I am trying to document the "value" section of a function. The function
returns a list, but the list itself also has attributes. I would like to
itemize the list entries, and itemize the attributes, but in between I would
like to have a sen
Dear all,
from the help page of quantile:
"x numeric vectors whose sample quantiles are wanted. Missing
values are ignored."
from the help page of IQR:
"x a numeric vector."
as a matter of facts it seems that both quantile() and IQR() do not
check for the presence of a numeric input.
S
I see the same problem on Windows XP.
But if I run loess with surface='direct' then the results are correct. So it
looks like the problem comes from the smoothing/interpolating, not the main
loess algorithm.
--
Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
greg
Mark Difford wrote:
Hi Uwe,
This is not a problem under Vista, using "a" development version (mine now
somewhat outdated).
Mark, as others have reported and debugged so far and you can see on the
lists, the problem is more serious than I thought it is and it is
probably also a problem unde
I posted this a few years ago (but found I never really had a
need for it):
http://tolstoy.newcastle.edu.au/R/help/04/06/1430.html
On Thu, Mar 5, 2009 at 9:22 AM, ivo welch wrote:
> dear R developers: it is of course easy for a third party to make
> suggestions if this third party is both clu
Terry,
1. R CMD build on your package reports at least two warnings for me.
2. R CMD check gives dozens of warnings even before the test cases where
it already stops in gtest.R rather than anaything called gchol2.R.
3. There is no tests/gchol2.R !!!
Perhaps you want to clean up some other i
On Mar 5, 2009, at 7:59 AM, Prof Brian Ripley wrote:
On Thu, 5 Mar 2009, Peter Dalgaard wrote:
Prof Brian Ripley wrote:
Undortunately the example is random, so not really reproducible
(and I
see nothing wrong on my Mac). However, Linux valgrind on R-devel is
showing a problem:
==3973== Co
dear R developers: it is of course easy for a third party to make
suggestions if this third party is both clueless and does not put in
any work. with these caveats, let me suggest something.
The syntax for returning multiple arguments does not strike me as
particularly appealing. would it not p
Hi Uwe,
This is not a problem under Vista, using "a" development version (mine now
somewhat outdated).
Regards, Mark.
sessionInfo()
R version 2.9.0 Under development (unstable) (2009-01-22 r47686)
i386-pc-mingw32
locale:
LC_COLLATE=English_South Africa.1252;LC_CTYPE=English_South
Africa.1252
Greetings -
I am trying to document the "value" section of a function. The function
returns a list, but the list itself also has attributes. I would like to
itemize the list entries, and itemize the attributes, but in between I would
like to have a sentence or two about the attributes in general
Hi, my name is Paula. Im trying to learn how to build an R package in
Windows XP using a simple example which includes a C source code. The
foo.c file is located in mypkg/src/foo.c.
I used the command Rcmd build --force --binary [pkgpath]. The problem is
when I install the zip file in R the funct
I've converted the bdsmatrix package (used by coxme) to the newer style of
S4, and uploaded it. It is in the pkg directory of survival, on r-forge.
I'm stuck on something that is almost certainly a namespace issue. I've
borrowed liberally from Matrix (a big help) and read the documentation, and
Thanks Uwe, I've added your patch to R-devel (2.9.0 to be).
On Thu, 19 Feb 2009, lig...@statistik.tu-dortmund.de wrote:
j.j.goe...@lumc.nl wrote:
Full_Name: Jelle Goeman
Version: 2.8.1
OS: Win XP
Submission from: (NULL) (87.212.67.197)
I get the following error message when I try to make a
No objections from Martin or elsewhere, so I have now committed this.
Thanks, Uwe.
On Tue, 24 Feb 2009, Uwe Ligges wrote:
> [CCing Martin and Brian who had both done most svn commits of boxplot.R so
> far]
>
>
> A very minor wishlist item that I should have already reported years ago:
>
> All t
The problem is that \pkg gets included (unescaped) in a Perl
substitution, and in modern Perl \p has a meaning (Unicode property).
Needs to be escaped/quoted, or the code to work a different way (which
is probably preferable).
On Thu, 5 Mar 2009, lig...@statistik.tu-dortmund.de wrote:
For t
John,
> the 2008 book ...
I suspected that I had overlooked something simple. This fits the
bill.
> R 2.8.1
I have been using 2.7. I will update.
Thanks for the help.
Terry
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mai
For the record (and as privately discussed with Brian Ripley), happens
with all recent versions of R including R-devel from today:
Consider a simple a.Rd file containing the lines
==
\name{a}
\title{a}
\value{\code{a} \code{\link[a]{a}} \pkg{a}
\item{a}{a}
}
Hi Terry,
Terry Therneau wrote:
I'm working on the next version of coxme, one step of which is converting
the bdsmatrix library from Splus to R. Actually, it is a conversion from
S4 methods as first described in the Green book to S4 methods as they
currently exist. Mostly it's going ok, but
Full_Name: Petr Savicky
Version: 2.7.2, 2.8.1, 2.9.0
OS: Linux
Submission from: (NULL) (147.231.6.9)
The p-value of Spearman's rank correlation test is calculated in
cor.test(x, y, method="spearman")
using algorithm AS 89. However, the way how AS 89 is used incures error,
which may be an order
Hello,
I am developing a package that needs data to persist between sessions of
R (For example a sqlite database file, or simple dumps of R data with
save/load). What I am using so far is :
file.path( Sys.getenv( "HOME"), ".R", "myPackage" )
but I was wondering if I am missing an "official"
Firefox 3.0.7 has been released, and it fixes the bug described below.
Duncan Murdoch
On 1/12/2009 8:22 AM, Duncan Murdoch wrote:
On 1/9/2009 11:59 AM, Duncan Murdoch wrote:
I finally upgraded to Firefox 3.05 from 2.x, and now I can reproduce a
bug a colleague has been complaining about but wh
On 3/5/2009 7:10 AM, Prof Brian Ripley wrote:
Undortunately the example is random, so not really reproducible (and I
see nothing wrong on my Mac). However, Linux valgrind on R-devel is
showing a problem:
I can reproduce it using y <- sin(x) instead of rnorm(100), on R-patched
(not R-devel).
http://streaming.stat.iastate.edu/CRAN/
Writing R extensions
Online html version, 3/5/09
Section 1.6.6, second sentence
"For instance, the stats package has..."
From the context of sentences in the next paragraph I think it should say
stats4.
Terry T.
__
Prof Brian Ripley wrote:
On Wed, 4 Mar 2009, Terry Therneau wrote:
[SNIP]
2. In the pdf for the survival package, or at least the one generated
by R CMD check, the entries are in a random order. Can I fix this?
It makes reading the document to look for errors rather challenging.
(That is,
I think this should now work (one of several 'FIXME' issues addressed
in the latest commit -- there are still some to go, but 2.9.0 is not
due for 6 weeks).
It is always useful to have a real test example, though. (I used rgl
in relation to some discussion about paths on r-sig-mac.)
On Tue,
I read
For printing \dontrun should be a no-op.
to mean that it should produce no output, but I suspect you meant you
wanted it to pass its argument through verbatim.
If we were continuing with the Rdconv.pm I would be suggesting adding
some markup for that job (e.g. \verbdontrun), but as
You've answered my question 2 about why the manual was in odd order
> R CMD check was more of a check of the latex version of the files, not
> the final manual.
I was looking at the result of R CMD check, and it was in random order
(perhaps file date?), not just a different collation choice. Very
On Thu, 5 Mar 2009, Peter Dalgaard wrote:
Prof Brian Ripley wrote:
Undortunately the example is random, so not really reproducible (and I
see nothing wrong on my Mac). However, Linux valgrind on R-devel is
showing a problem:
==3973== Conditional jump or move depends on uninitialised value(s)
=
Prof Brian Ripley wrote:
> Undortunately the example is random, so not really reproducible (and I
> see nothing wrong on my Mac). However, Linux valgrind on R-devel is
> showing a problem:
>
> ==3973== Conditional jump or move depends on uninitialised value(s)
> ==3973==at 0xD76017B: ehg141_ (
Undortunately the example is random, so not really reproducible (and I
see nothing wrong on my Mac). However, Linux valgrind on R-devel is
showing a problem:
==3973== Conditional jump or move depends on uninitialised value(s)
==3973==at 0xD76017B: ehg141_ (loessf.f:532)
==3973==by 0xD76
Uwe Ligges wrote:
> Berwin A Turlach wrote:
>
>> G'day Peter,
>>
>> On Thu, 05 Mar 2009 09:09:27 +0100
>> Peter Dalgaard wrote:
>>
>>
>>> rha...@stat.purdue.edu wrote:
>>>
<>
This is a CRITICAL bug!!! I have verified it in R 2.8.1 for mac
and for windows. The p
Uwe Ligges wrote:
Berwin A Turlach wrote:
G'day Peter,
On Thu, 05 Mar 2009 09:09:27 +0100
Peter Dalgaard wrote:
rha...@stat.purdue.edu wrote:
<>
This is a CRITICAL bug!!! I have verified it in R 2.8.1 for mac
and for windows. The problem is with loess degree=0 smoothing.
F
On Wed, 4 Mar 2009, Terry Therneau wrote:
1. I often like to put bits of the output into the manual pages. (We can
have a discussion of the value of this elsewhere -- I think it is sometimes
a good thing.)
I presume you mean in the \examples section of the .Rd files, not
elsewhere in the hel
Berwin A Turlach wrote:
> G'day Peter,
>
> On Thu, 05 Mar 2009 09:09:27 +0100
> Peter Dalgaard wrote:
>
>> rha...@stat.purdue.edu wrote:
>>> <>
>>>
>>> This is a CRITICAL bug!!! I have verified it in R 2.8.1 for mac
>>> and for windows. The problem is with loess degree=0 smoothing.
>>> For exa
Berwin A Turlach wrote:
G'day Peter,
On Thu, 05 Mar 2009 09:09:27 +0100
Peter Dalgaard wrote:
rha...@stat.purdue.edu wrote:
<>
This is a CRITICAL bug!!! I have verified it in R 2.8.1 for mac
and for windows. The problem is with loess degree=0 smoothing.
For example, try the following:
x
Terry Therneau wrote:
> I'm working on the next version of coxme, one step of which is converting
> the bdsmatrix library from Splus to R. Actually, it is a conversion from
> S4 methods as first described in the Green book to S4 methods as they
> currently exist. Mostly it's going ok, but not
G'day Peter,
On Thu, 05 Mar 2009 09:09:27 +0100
Peter Dalgaard wrote:
> rha...@stat.purdue.edu wrote:
> > <>
> >
> > This is a CRITICAL bug!!! I have verified it in R 2.8.1 for mac
> > and for windows. The problem is with loess degree=0 smoothing.
> > For example, try the following:
> >
> >
I don't see why this is relevant to R-devel rather than R-help.
Your script must be very old: the NEWS for R 1.9.0 said
Packages ctest, eda, modreg, mva, nls, stepfun and ts have been
merged into stats, and lqs has been returned to MASS.
That's 5 years ago now.
Function nls() s
> "JL" == Jerry Lewis
> on Thu, 26 Feb 2009 16:15:11 +0100 (CET) writes:
JL> Full_Name: Jerry W. Lewis
JL> Version: 2.8.1
JL> OS: Windows XP Professional
JL> Submission from: (NULL) (198.180.131.16)
JL> It should be the case that
JL> besselI(x,-nu) == besselI
Dear all,
I've written a R to python/octave/r translator that (so you can call
python from R etc and vice versa) enabling you to e.g. call matplotlib
which just runs fine on the first command
when I do
Rf_initEmbeddedR(2, argv);
Rf_endEmbeddedR(0);
Rf_initEmbeddedR(2, argv);
Rf_
rha...@stat.purdue.edu wrote:
<>
This is a CRITICAL bug!!! I have verified it in R 2.8.1 for mac and
for windows. The problem is with loess degree=0 smoothing. For
example, try the following:
x <- 1:100
y <- rnorm(100)
plot(x, y)
lines(predict(loess(y ~ x, degree=0, span=0.5)))
This is
Could you explain what you are seeing that is wrong?
In R 2.7.2, which is what I have here, it looks ok, and the NEWS file doesn't
list any changes since 2.7.1.
-thomas
On Wed, 4 Mar 2009 rha...@stat.purdue.edu wrote:
<>
This is a CRITICAL bug!!! I have verified it in R 2.8.1 for m
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