Re: [Rd] Problem with adding slots to S4 object

2015-05-06 Thread Thierry Onkelinx
Dear Michael, Thank you very much for your reply. It helped me to solve the problem and increased my understanding of S4 objects. I've updated the github repository in case someone else might be interested. Best regards, Thierry ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek /

Re: [Rd] Shouldn't vector indexing with negative out-of-range index give an error?

2015-05-06 Thread Martin Maechler
John Chambers j...@stat.stanford.edu on Tue, 5 May 2015 08:39:46 -0700 writes: When someone suggests that we might have had a reason for some peculiarity in the original S, my usual reaction is Or else we never thought of the problem. In this case, however, there is a relevant

Re: [Bioc-devel] 'memory not mapped' in trimLRpatterns

2015-05-06 Thread Hervé Pagès
Hi Michael, I finally got to fix this in Biostrings 2.36.1 (release) and 2.37.2 (devel). Both should become available via biocLite() on Friday around 11am (Seattle time). Thanks for your patience. Cheers, H. On 04/30/2015 10:50 AM, Hervé Pagès wrote: Hi Michael, Thanks for the reminder. I

Re: [Rd] Integrate R in perl6

2015-05-06 Thread grondilu
Perl6 is not great to do maths, even at basic level. So a dedicated sub-language (slang in perl6 linguo) would make a lot of sense indeed, and R would be a natural choice (other possibilities are octave and J). I don't know much about R, I've used it a little bit once but have forgotten pretty

[Rd] capabilities(X11): Force refresh from within R? (... and minor documentation issue)

2015-05-06 Thread Henrik Bengtsson
Is there a way to refresh capabilities(X11) without restarting R such that it reflects the enabling/disabling of X11? BACKGROUND: If I launch R with X11 server disabled (e.g. ssh -X / ssh -Y to remote Linux but forgot to enable Xming on local Windows), then I get: capabilities(X11) X11

Re: [Rd] IdntoAscii issue with KERNEL32.dll on 64-bit R on Windows Server 2003 x64 SP2

2015-05-06 Thread Duncan Murdoch
On 06/05/2015 2:38 PM, Vinh Nguyen wrote: On Wed, May 6, 2015 at 9:44 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On the MSDN page for that function, it mentions that you need a header file and DLL to use it in XP or Server 2003. You might try downloading the DLL to see if it works

Re: [Rd] IdntoAscii issue with KERNEL32.dll on 64-bit R on Windows Server 2003 x64 SP2

2015-05-06 Thread Vinh Nguyen
On Wed, May 6, 2015 at 9:44 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On the MSDN page for that function, it mentions that you need a header file and DLL to use it in XP or Server 2003. You might try downloading the DLL to see if it works for you automagically; I think it's

Re: [Rd] Shouldn't vector indexing with negative out-of-range index give an error?

2015-05-06 Thread Henrik Bengtsson
On Wed, May 6, 2015 at 1:33 AM, Martin Maechler maech...@lynne.stat.math.ethz.ch wrote: John Chambers j...@stat.stanford.edu on Tue, 5 May 2015 08:39:46 -0700 writes: When someone suggests that we might have had a reason for some peculiarity in the original S, my usual reaction is

Re: [Rd] IdntoAscii issue with KERNEL32.dll on 64-bit R on Windows Server 2003 x64 SP2

2015-05-06 Thread Duncan Murdoch
On 06/05/2015 10:57 AM, Vinh Nguyen wrote: Dear list, With the new R 3.2.0 on the aforementioned platform, I get the following pop-up error when I enter ?update.packages using R64: The procedure entry point IdnToAscii could not be located in the dynamic link library KERNEL32.dll That is, my

Re: [Rd] Shouldn't vector indexing with negative out-of-range index give an error?

2015-05-06 Thread Hervé Pagès
Hi, On 05/06/2015 09:04 AM, Henrik Bengtsson wrote: On Wed, May 6, 2015 at 1:33 AM, Martin Maechler maech...@lynne.stat.math.ethz.ch wrote: John Chambers j...@stat.stanford.edu on Tue, 5 May 2015 08:39:46 -0700 writes: When someone suggests that we might have had a reason for some

[Rd] IdntoAscii issue with KERNEL32.dll on 64-bit R on Windows Server 2003 x64 SP2

2015-05-06 Thread Vinh Nguyen
Dear list, With the new R 3.2.0 on the aforementioned platform, I get the following pop-up error when I enter ?update.packages using R64: The procedure entry point IdnToAscii could not be located in the dynamic link library KERNEL32.dll That is, my command never gets executed. This does NOT