As Peter pointed out.
data loads data from packages. Various formats are supported. The package
author(s) will decide how best to ship (and load) any such data.
When you call `data(iris)`, it loads iris as it is defined in the datasets
package
The definition can be seen here:
On Thu, Feb 18, 2016 at 6:03 PM, Cook, Malcolm wrote:
> Hi Peter,
>
> Sorry if I was not clear. Perhaps an example will make my point:
>
>> data(iris)
>> class(iris$Species)
> [1] "factor"
>> write.table(iris,'data/myiris.tab')
>> data(myiris)
>> class(myiris$Species)
> [1]
Hi Peter,
Sorry if I was not clear. Perhaps an example will make my point:
> data(iris)
> class(iris$Species)
[1] "factor"
> write.table(iris,'data/myiris.tab')
> data(myiris)
> class(myiris$Species)
[1] "factor"
> rm(myiris)
> options(stringsAsFactors = FALSE)
> data(myiris)
>
On 02/11/2016 07:02 AM, Michael Lawrence wrote:
Changing the vapply() behavior makes sense in principle.
Sorry to disagree, Changing the behavior of sapply() so we end up
with consistent treatment of USE.NAMES across sapply(), vapply(),
and mapply() sounds much better *in principle*.
I
What the are you on about? data() does many things, only some of which
call read.table() et al., and the ones that do have no special treatment of
stringsAsFactors.
-pd
> On 18 Feb 2016, at 21:25 , Cook, Malcolm wrote:
>
> Hiya,
>
> Probably been debated elsewhere
>
On Mon, Feb 15, 2016 at 3:28 AM, Jesper Gådin wrote:
> Hi Paul,
>
> This might be what you are looking for.
> https://stat.ethz.ch/pipermail/r-devel/2015-April/070951.html
>
> Jesper
>
Thanks to help form Wes Mason at KU and Jesper Gadin in r-devel, I
compiled R-devel on
Hiya,
Probably been debated elsewhere
I note that R's `data` function does not respect default.stringsAsFactors
By my lights, it should, especially as it is documented to call read.table,
which DOES respect.
Oh, but:
Dear Rebecca
can you please post this in the Bioconductor user forum - this is not really a
developer question.
> On Feb 17, 2016, at 20:33 GMT+1, sun wrote:
>
> Hi All,
>
> How can I specify the color that I would like to use in
> plotMutationSpectrum()?
>
> eg.
>
>
On 02/18/2016 01:00 AM, Maintainer wrote:
Hello,
Hi,
I'm putting this back to bioc-devel and setting the Subject to
"Strand-Awareness for Restrict Function" since this seems to be
a continuation of this thread (that you started here). I hope you
don't mind.
Setdiff automatically reduces
Hi,
On 02/18/2016 03:00 AM, Dario Strbenac wrote:
Good day,
Thank you for these two suggestions. I have questions about both options.
GPos seems to have a limit on the number of bases it can represent. I get an
error: Error in GPos(samplingAreas) : too many genomic positions in 'pos_runs'.
Good day,
Thank you for these two suggestions. I have questions about both options.
GPos seems to have a limit on the number of bases it can represent. I get an
error: Error in GPos(samplingAreas) : too many genomic positions in 'pos_runs'.
What exactly is this limit ? Could it be added to the
A nice default value for the `destfile` argument in download.file() would
be `basename(url)` i.e. the name of the downloaded file. This would
correspond to default behavior in many other web/ftp clients and makes code
slightly more concise:
You misunderstand what .libPaths does: it changes the path in the
current session only. Installation uses a different R process.
Set R_LIBS to change the library path for new sessions: see ?.libPath .
On 18/02/2016 07:00, Dario Strbenac wrote:
Good day,
If the library path is changed with
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