Re: [Rd] Patch idea: an environment variable for setting the user ID

2018-11-11 Thread Kurt Hornik
> Will L writes: > To R-devel, > In `R CMD build`, the ID of the user is automatically inserted into the > DESCRIPTION file, e.g. > Packaged: 2018-11-06 14:01:50 UTC; > This is problematic for those of us who work in corporate settings. We must > not divulge our user IDs in the packages

[R-pkg-devel] Fwd: [CRAN-pretest-archived] CRAN submission maGUI 2.3

2018-11-11 Thread dhamma pal
The latest version donot use BIOCINSTALLER or bioclite, still getting a warning. Errors are not detected in the current version, i.e. 2.3 version of maGUI. But errors are getting reported in the earlier version i.e., 2.2 which is not the making the current version to pass through the CRAN. I have

Re: [R-pkg-devel] Unexpected symbol when checking package examples

2018-11-11 Thread Duncan Murdoch
On 11/11/2018 6:53 PM, Duncan Murdoch wrote: On 11/11/2018 3:39 PM, Jared Knowles wrote: Hi! I have a bit of a weird issue when I'm trying to check my package merTools (source repo available here: https://github.com/jknowles/merTools On Windows and Linux builds for R-release and R-devel, when

Re: [R-pkg-devel] Unexpected symbol when checking package examples

2018-11-11 Thread Duncan Murdoch
On 11/11/2018 3:39 PM, Jared Knowles wrote: Hi! I have a bit of a weird issue when I'm trying to check my package merTools (source repo available here: https://github.com/jknowles/merTools On Windows and Linux builds for R-release and R-devel, when R CMD CHECK checks examples, it returns the

Re: [R-pkg-devel] Unexpected symbol when checking package examples

2018-11-11 Thread Peter Dalgaard
Not just a capitalization issue (mertools vs. merTools)? Barring that, maybe locale trouble? Can you also do things like LC_ALL=C R < merTools-Ex.R ? Also, check for lines starting with "else" (I think you shouldn't be able to run it line-by-line if that was the issue, though). -pd > On 11

[Rd] Patch idea: an environment variable for setting the user ID

2018-11-11 Thread Will L
To R-devel, In `R CMD build`, the ID of the user is automatically inserted into the DESCRIPTION file, e.g. Packaged: 2018-11-06 14:01:50 UTC; This is problematic for those of us who work in corporate settings. We must not divulge our user IDs in the packages we develop and release. Jim

[R-pkg-devel] Unexpected symbol when checking package examples

2018-11-11 Thread Jared Knowles
Hi! I have a bit of a weird issue when I'm trying to check my package merTools (source repo available here: https://github.com/jknowles/merTools On Windows and Linux builds for R-release and R-devel, when R CMD CHECK checks examples, it returns the following error below: Warning: parse error in

Re: [Bioc-devel] 答复: A little confuse about how to update accepted package

2018-11-11 Thread Martin Morgan
The release branch should be numbered 1.0.1, 1.0.2, 1.0.3, ... The devel branch should be numbered 1.1.1, 1.1.2, 1.1.3, ... It does not matter, from the build and distribution perspective, what your github repository contains. What matters is the content of git.bioconductor.org repository, the

Re: [Bioc-devel] 答复: A little confuse about how to update accepted package

2018-11-11 Thread Matthias Doering
Dear Wenhao, regarding your two points: 1. If you have incremented your version number and pushed to one of the Bioconductor servers (either upstream master or release), a build is automatically triggered. The build cycle is 24 hours if I remember correctly. 2.You don't need to have a

[Bioc-devel] 答复: A little confuse about how to update accepted package

2018-11-11 Thread Tang, Wenhao
Dear all, Currently, for both branches: master and RELEASE_3_8 in my github repository: https://github.com/WT215/bayNorm/tree/master have been updated with version number 1.0.2. However, in the latest build report: http://bioconductor.org/checkResults/3.8/bioc-LATEST/bayNorm/ the version