Re: [R-pkg-devel] BH windows compilation issues in R devel

2021-01-19 Thread Frantisek Bartos
thanks for the quick response Dirk, I did more digging and found that the error is caused by a single line (in bold bellow, commenting it out and defining log_lik = 0 does not trigger the error) but I have absolutely no idea why it is creating the problems #include "DTboost.h" #include #include

Re: [R-pkg-devel] BH windows compilation issues in R devel

2021-01-19 Thread Dirk Eddelbuettel
On 19 January 2021 at 21:51, Frantisek Bartos wrote: | I wanted to submit a new version of my package and I encountered issues | with boost when compiling it on R devel version for windows. (Please excuse | my stupidity, but I'm a complete noob in regards to compilers and C++) | | A full error

[R-pkg-devel] BH windows compilation issues in R devel

2021-01-19 Thread Frantisek Bartos
Hi all, I wanted to submit a new version of my package and I encountered issues with boost when compiling it on R devel version for windows. (Please excuse my stupidity, but I'm a complete noob in regards to compilers and C++) A full error stack is accessible here (the Debian one worked without

Re: [R-pkg-devel] Solaris x68 and C++17

2021-01-19 Thread Florian Rupprecht
Thank you for the quick response and the information. For some reason the Solaris results have now disappeared completely from the check results page. (Now there are some additional issues I have to look into.) I will wait for the rest of the checks to complete and might write a similar shell

Re: [R-pkg-devel] Solaris x68 and C++17

2021-01-19 Thread Dirk Eddelbuettel
On 19 January 2021 at 17:45, Florian Rupprecht wrote: | Hello, | | the CRAN checks show an error for my newly released package 'httpgd' with | 'r-patched-solaris-x86': | | Error: C++17 standard requested but CXX17 is not defined | | It seems like 'rcppsimdjson' had the same problem ( |

[R-pkg-devel] Solaris x68 and C++17

2021-01-19 Thread Florian Rupprecht
Hello, the CRAN checks show an error for my newly released package 'httpgd' with 'r-patched-solaris-x86': Error: C++17 standard requested but CXX17 is not defined It seems like 'rcppsimdjson' had the same problem ( https://github.com/eddelbuettel/rcppsimdjson/issues/7) and worked around it by

[Bioc-devel] Change of package mantainer/manager

2021-01-19 Thread Carles Hernández
Dear community, I would like to transfer rexposome and omicRexposome management to one of my colleagues since I am no longer a member of the institution owning the packages. Can someone explain to me the steps to make this change? Kinds regards, ~Cales --- Carles Hernandez-Ferrer Bioinformatic

[Bioc-devel] Bioconductor Developers Forum - 21st January

2021-01-19 Thread Mike Smith
Dear all, The next Bioconductor Developers' Forum is this Thursday 21st January at 09:00 PST / 12:00 EST / 18:00 CET - You can find a calendar invite attached and at *https://tinyurl.com/BiocDevel-2021-01 * - This month we will hear from Jass Bagga and

Re: [Rd] sorting bug in R-devel?

2021-01-19 Thread Bob Rudis
base::icuSetCollate might be what you need. There are some decent examples in the manual page on it. On Tue, Jan 19, 2021 at 7:30 AM Thierry Onkelinx via R-devel wrote: > > Dear Peter, > > Thanks for the feedback on the locale. Is there a better alternative for > the C locale? One that yields a

Re: [Rd] sorting bug in R-devel?

2021-01-19 Thread Thierry Onkelinx via R-devel
Dear Peter, Thanks for the feedback on the locale. Is there a better alternative for the C locale? One that yields a consistent and stable sorting independent of the R version and OS. Best regards, Thierry ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government of

Re: [Rd] sorting bug in R-devel?

2021-01-19 Thread Peter Dalgaard
Not sure what happened between 4.0.2 and -devel, but you are using C collation, which assumes 7-bit single-byte characters, to sort multi-byte 8-bit encoded characters, which looks a bit risky. -pd > On 19 Jan 2021, at 10:10 , Thierry Onkelinx via R-devel > wrote: > > Dear all, > > My

[Rd] sorting bug in R-devel?

2021-01-19 Thread Thierry Onkelinx via R-devel
Dear all, My git2rdata package relies on a stable sorting. I've noticed that some characters get a different position under R-devel under Windows 10. This is why the unit test of my package only fail in this combination (https://cran.r-project.org/web/checks/check_results_git2rdata.html) Below