[Rd] R and Commercial applications

2006-04-20 Thread A.J. Rossini
From: Philippe Grosjean [EMAIL PROTECTED] However, I was suprised to learn that the Pipeline Pilot R Collection is not GPL and is not free (in term of money, i.e., you have to pay 3500$/year to use it). I am not sure, but I think they break the GPL license here since they use a commercial

Re: [Rd] Embedding, core dumps, etc.

2006-04-19 Thread A.J. Rossini
, It is possible to turn stack checking off by setting R_CStackLimit = -1 in the embedding application: it works for me, so can you please try it? Brian On Wed, 19 Apr 2006, A.J. Rossini wrote: Well, nothing has changed in the issues that I brought up earlier, except that I can confirm core

Re: [Rd] Embedding, core dumps, etc.

2006-04-19 Thread A.J. Rossini
connected again). On 4/19/06, A.J. Rossini [EMAIL PROTECTED] wrote: It doesn't seem to help. I suspect it is more related to signal handling changes than the stack. Note that I dropped that from the subject line for my email which started this thread, but I agree, I didn't mention signal handing

Re: [Rd] Embedding, core dumps, etc.

2006-04-19 Thread A.J. Rossini
I should also make it clear -- while I reported non-fatal stack errors in the first thread, I'm not seeing them any more, just the core dump. On 4/19/06, A.J. Rossini [EMAIL PROTECTED] wrote: I'm going to recode the sequence in C tommorow (I'm in Seattle right now, not Basel, so it's late

Re: [Rd] Stack checking, core dumps, and embedding R

2006-04-12 Thread A.J. Rossini
I'm pretty sure that we've fixed that problem. (I'm merging 2 different CL/R trees together, one of which is Cyrus's). An alternative fix patched R to undo that, but that's not kosher. best, -tony On 4/12/06, Thomas Lumley [EMAIL PROTECTED] wrote: On Tue, 11 Apr 2006, A.J. Rossini wrote

Re: [Rd] Stack checking, core dumps, and embedding R

2006-04-11 Thread A.J. Rossini
On 4/11/06, Prof Brian Ripley [EMAIL PROTECTED] wrote: On Tue, 11 Apr 2006, A.J. Rossini wrote: I will say this first -- I can't copy/paste the error message from the screen, so it's being retyped. Errors might occur. SORRY. I've been experiencing some interesting stack warnings

Re: [Rd] Stack checking, core dumps, and embedding R

2006-04-11 Thread A.J. Rossini
is being embedded doing anything with the stack, e.g. some lisp system playing with threads via manipulating the stack? D. A.J. Rossini wrote: I will say this first -- I can't copy/paste the error message from the screen, so it's being retyped. Errors might occur. SORRY. I've been

Re: [Rd] Stack checking, core dumps, and embedding R

2006-04-11 Thread A.J. Rossini
On 4/12/06, Simon Urbanek [EMAIL PROTECTED] wrote: On Apr 11, 2006, at 5:34 AM, A.J. Rossini wrote: I've been experiencing some interesting stack warnings recently when moving from R 2.2.x to the R 2.3.0 series and the R 2.4.0 series. In particular, I'm getting warnings of Error: C stack

[Rd] reinventing the wheel....

2005-12-29 Thread A.J. Rossini
-- Forwarded message -- From: Byron Ellis [EMAIL PROTECTED] If we wanted to be truly radical we'd just accept that graphics devices and event loops are just special cases of the connection and merge the whole thing, thus more-or-less reinventing CLIM. :-) Eventually, all

Re: [Rd] cross-compiling tools

2005-10-19 Thread A.J. Rossini
the new tar ball. And I have also been corrected: most of the work on the cross- compiling tools were in fact done by Brian Ripley. Kasper On Oct 18, 2005, at 10:45 AM, A.J. Rossini wrote: Technically, Jun Yan, based on work and documentation most likely by Brian Ripley, with Tony

Re: [Rd] cross-compiling tools

2005-10-18 Thread A.J. Rossini
Technically, Jun Yan, based on work and documentation most likely by Brian Ripley, with Tony prodding Jun. Though I'm sure even that would be corrected. Sorry, no clue, as I'm not using R nor Linux at work these days. I'm sure someone else knows. On 10/18/05, Kasper Daniel Hansen [EMAIL

Re: [Rd] more problems when using installWithVers

2005-10-04 Thread A.J. Rossini
it correctly and so works. I am not sure BTW that lattice_0.12-7 is necessarily compatible with R 2.2.0. Brian On Tue, 4 Oct 2005, A.J. Rossini wrote: R-devel, SVN revision 35729 (this morning, euro-time) So far, I'm having awful luck with the installWithVers flags. Recent example

Re: [Rd] Option installWithVers seems to impact new.packages() badly?

2005-10-04 Thread A.J. Rossini
. new.packages() showed it as new in both 2.1.1 and 2.2.0-beta. The issue is that installed.packages() has never been taught about versioned installs, and you might like to take that up with your BioC colleagues who added the idea. On Fri, 30 Sep 2005, A.J. Rossini wrote: In Rdevel, SVN

[Rd] Does the installWithVers=TRUE setting for the install.packages/update.packages flag updates?

2005-09-29 Thread A.J. Rossini
It might be my settings or improper use -- but if I use the installWithVers=TRUE flag for update.packages(), I don't seem to get updates; and if I use install.packages(new.packages(),installWithVers=TRUE), it seems to (re-)install identical versions of what I have. (this is with Rdevel from