Re: [Rd] how to unbreak a circular package dependence (S4 class data)

__ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel [[alternative HTML version deleted]] -- Claudia Beleites, Chemist Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany

Re: [Rd] FOSS licence with BuildVignettes: false

, for a FOSS package, the means to re-build the vignettes has to available to others, and CRAN therefore tries it so see if all the sources are available. Almost every time we uncover some problem with the sources and stale vignette PDFs. -- Claudia Beleites, Chemist Spectroscopy/Imaging

Re: [Rd] Contribution

://stat.ethz.ch/mailman/listinfo/r-devel -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone: +49 3641 206-133 fax: +49 2641 206-399 __ R-devel@r

[Rd] as.numeric and as.character with locale using comma as separator

bewirken, dass R sich komisch benimmt as.numeric (as.character (x)) works as supposed (also output has decimal points again) Best, Claudia -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de

Re: [Rd] test suites for packages

/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei

Re: [Rd] R datasets ownership(copyright) and license

://en.wikipedia.org/wiki/Tz_database [4] it is interesting there that actual data comes from unpublished PhD thesis, but once again from the U of Chicago who holds copyright for the book itself. -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9

Re: [Rd] CRAN policies

of the version number (e.g. hyperSpec 0.98-20120320), which I set automatically. Claudia -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone: +49 3641 206-133 fax: +49 2641 206-399

Re: [Rd] Command completion of the R binary / Ubuntu

Am 11.01.2012 19:53, schrieb Sharpie: The bash completion script is also used by the Homebrew package manager on OS X. There we go... good to know. -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht

[Rd] Command completion of the R binary / Ubuntu

] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone: +49 3641

Re: [Rd] CRAN: How to list a non-Sweave doc under Vignettes: on package page?

this solution as a temporary hack until non-Sweave vignettes become first class citizens. Hadley -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone: +49 3641 206-133 fax: +49 2641 206

Re: [Rd] Data package questions

example is really unpolite on CRAN), but I provide it at r-forge and give the link on the help page and in the vignette. Claudia -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone: +49 3641

[Rd] logos

Dear all, I'd like to link one of the logos in our Google Summer of Code Profile. If I remember correctly, behind the logo link at http://developer.r-project.org/ (i.e. http://developer.r-project.org/Logo) also small versions can be found. However, I'm not allowed to access that directory. I

Re: [Rd] Sweave: multiple graphic formats, e.g. win.metafile

On 03/23/2011 01:05 PM, Prof Brian Ripley wrote: We are currently in the process of implementing PNG and JPEG for 2.13.0, and an extensible architecture is planned for 2.14.0. :-) this is really good news :-) Thank you! -- Claudia Beleites DI3 Università degli Studi di Trieste Via Alfonso

[Rd] X error on r-forge

-- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it __ R-devel@r-project.org mailing list https://stat.ethz.ch

[Rd] vignette question was: CRAN package sizes

-- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it __ R-devel@r-project.org mailing list https://stat.ethz.ch

Re: [Rd] vignette question was: CRAN package sizes

Please excuse the noise about dummy .Rnw. On 02/15/2011 03:44 PM, Claudia Beleites wrote: Also I started doing my homework with regards to package size, and that is mainly cleaning leftovers from vignette generation and compressing the pdfs. For most of my vignettes, ghostscript (lossy

[Rd] drop argument for apply, rowSums, etc.

find it here. Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it # From base/R/colSums.R .colSums - function(x, na.rm = FALSE

Re: [Rd] dependencies on system packages

Dear all, From the writing extensions manual: Other dependencies (external to the R system) should be listed in the ‘SystemRequirements’ field, possibly amplified in a separate README file. I guess one problem is the user may not realize that the -dev version is needed, and just sees libxml2

[Rd] Google Summer of Code 2011

Dear all, I just saw that Google Summer of Code 2011 is announced: http://www.google-melange.com/ Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei

Re: [Rd] plotmath indices: suggested addition to help file

(sigma16, gc, dd); SetSubStyle(style, mc, gc); +sub = LCONS (list, sub); subBBox = RenderElement(sub, 0, mc, gc, dd); v = max(max(v, s16), bboxHeight(subBBox) - 0.8 * sigma5); subBBox = RenderOffsetElement(sub, 0, -v, draw, mc, gc, dd); -- Claudia Beleites Dipartimento dei

[Rd] plotmath indices: suggested addition to help file

for ? However, I suggest to announce the fact that only the first parameter is printed in plotmath.Rd. E.g. in the table l. 72 \code{x[i]} \tab x subscript i; escape further indices (\code{x [i, j]})\cr Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali

Re: [Rd] R vs. C now rather: how to ease package checking

/mailman/listinfo/r-devel -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it __ R-devel@r-project.org

Re: [Rd] R vs. C

}} __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68

[Rd] Vignette Questions

packages but that's quite a hassle. Thank you very much for your kind help! Claudia Beleites -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Valerio 2 I-34127 Trieste ITALY email: cbelei...@units.it phone: +39 (0 40) 5 58-34 68

Re: [Rd] SweaveInput + keep.source = TRUE trouble

the changes to implement that are too large to consider in a beta. Duncan Murdoch On 05/10/2010 5:38 AM, Claudia Beleites wrote: Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken from

Re: [Rd] SweaveInput + keep.source = TRUE trouble

attached base packages: [1] stats graphics grDevices utils datasets methods base Claudia Beleites wrote: Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken from too far down

Re: [Rd] Does anyone use Sweave (RweaveLatex) option expand=FALSE?

I never used it. I got curious, though. What would be a situation that benefits of this option? Maybe a use case could be found by brute force (grep all .Rnw files on CRAN for the option? Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi

Re: [Rd] [R] cacheSweave / pgfSweave driver for package vignette

check. So I'd be very curious to see some make files. HTH, Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

Re: [Rd] rbind on data.frame that contains a column that is also a data.frame

Dear all, I also use matrices inside data.frames in my (S4) class hyperSpec. So, yes, it would be great if commands like apply would work as straightforward as e.g. rbind does on such data.frames. The problem here seems to me different, though: Is it possible that the relevant difference

[Rd] suggestion for sweep help page

of the same size. into the help page to clarify what input FUN should expect. Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

Re: [Rd] S4 dispatch for .DollarNames (utils)

setting up a dummy S3 class that is then used in the contains of the S4 definition. Any pitfalls with that? Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email

Re: [Rd] S4 dispatch for .DollarNames (utils)

John, Thank your for the explanation! Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

Re: [Rd] dots for sample -- implicitGeneric

Dear Martin, Martin Maechler wrote: CB == Claudia Beleites cbelei...@units.it on Sun, 28 Feb 2010 19:31:42 +0100 writes: CB Dear R-Developers, CB could 'sample' gain a ... argument? As you may know, adding '...' also has drawbacks, most notably that you lose automatic checking

[Rd] dots for sample

. For the moment, I use SetGeneric to add the dots argument, but this of course gives a warning that the base function sample is overwritten (and my colleagues are almost as scared of warnings as of errors...) Thanks, Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse

Re: [Rd] [SoC] R and Google Summer of Code 2010: Call for Proposals -

with the common 'GSoC' acronym. So go ahead and submit ideas! Dirk -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

[Rd] Sweave errors during package building

file testsweave.Rnw: test= a - 3 b - 1 @ now in R: a - 4 a [1] 4 b Error: object 'b' not found Sweave (testsweave.Rnw) Writing to file testsweave.tex Processing code chunks ... 1 : echo term verbatim (label=test) You can now run LaTeX on 'testsweave.tex' a [1] 3 b [1] 1 -- Claudia

Re: [Rd] methods vs. functions

Dear Duncan and Oleg, thanks for your answers. For the moment, I'll use functions. Happy new year, Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 (0 40) 5 58-34 47 email

Re: [Rd] ... (dotMethods) and cbind/rbind: how to give the signature?

Dear Oleg, thanks a lot! I'll have S3 methods until the problems settle somehow. I wasn't aware that S3 despatch works for S4 classes as well. Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127

[Rd] ... (dotMethods) and cbind/rbind: how to give the signature?

day20 svn rev46754 language R version.string R version 2.8.0 (2008-10-20) -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di

[Rd] methods vs. functions

of the class). Any comments? Thanks a lot! Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 (0 40) 5 58-34 47 email: cbelei...@units.it