Re: [Rd] how to unbreak a circular package dependence (S4 class data)

>> Dalhousie University, Canada > >> dan.kel...@dal.ca<mailto:dan.kel...@dal.ca> > >> > >> > >> > >> [[alternative HTML version deleted]] > >> > >> > >> > >>

Re: [Rd] FOSS licence with BuildVignettes: false

vignettes > requires unusual facilities -- presumably not R ones as it does not > turn off running the code. However, for a FOSS package, the means to > re-build the vignettes has to available to others, and CRAN therefore > tries it so see if all the sources are available. Almost eve

Re: [Rd] Contribution

> R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone

[Rd] as.numeric and as.character with locale using comma as separator

0188 -0.1884703 0.2507179 > library (qtbase) > x [1] -0,2290188 -0,1884703 0,2507179 After setting the numeric locale back to C: > Sys.setlocale ("LC_NUMERIC", "C") [1] "C" Warnmeldung: In Sys.setlocale("LC_NUMERIC", "C") : das Setzen v

Re: [Rd] test suites for packages

gt; Whit >> >> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailma

Re: [Rd] R datasets ownership(copyright) and license

t; package, so that it could be of help for other projects. > > [1] https://stat.ethz.ch/pipermail/r-help/2007-April/130422.html > [2] http://www.mail-archive.com/r-help@r-project.org/msg62486.html > [3] http://en.wikipedia.org/wiki/Tz_database > [4] it is interesting there that actua

Re: [Rd] CRAN policies

part of the version number (e.g. hyperSpec 0.98-20120320), which I set automatically. Claudia -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone: +49 3641 206-133 fax: +49

Re: [Rd] --as-cran / BuildVignettes: false

verwrites the one I provide, I use a Makefile - learnt that from one of Dirk Eddelbüttel's packages (forget which, but thanks, Dirk!) Claudia -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de

Re: [Rd] Command completion of the R binary / Ubuntu

Am 11.01.2012 19:53, schrieb Sharpie: > The bash completion script is also used by the Homebrew package manager on > OS X. There we go... good to know. -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia

Re: [Rd] Command completion of the R binary / Ubuntu: result

and Ubuntu) have it, so R-sig-debian is the appropriate mailing list. Deepayan moved the discussion there. Thanks. Have a nice day, Claudia -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de

[Rd] Command completion of the R binary / Ubuntu

=C LC_TELEPHONE=C [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email

Re: [Rd] CRAN: How to list a non-Sweave doc under "Vignettes:" on package page?

() - I see this solution as a temporary hack until non-Sweave vignettes become first class citizens. Hadley -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone: +49 3641 206-133 fax

Re: [Rd] Data package questions

30 MB toy example is really unpolite on CRAN), but I provide it at r-forge and give the link on the help page and in the vignette. Claudia -- Claudia Beleites Spectroscopy/Imaging Institute of Photonic Technology Albert-Einstein-Str. 9 07745 Jena Germany email: claudia.belei...@ipht-jena.de phone

[Rd] logos

Dear all, I'd like to link one of the logos in our Google Summer of Code Profile. If I remember correctly, behind the logo link at http://developer.r-project.org/ (i.e. http://developer.r-project.org/Logo) also small versions can be found. However, I'm not allowed to access that directory. I

Re: [Rd] Sweave: multiple graphic formats, e.g. win.metafile

On 03/23/2011 01:05 PM, Prof Brian Ripley wrote: We are currently in the process of implementing PNG and JPEG for 2.13.0, and an extensible architecture is planned for 2.14.0. :-) this is really good news :-) Thank you! -- Claudia Beleites DI3 Università degli Studi di Trieste Via Alfonso

[Rd] X error on r-forge

Thanks a lot, Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it __ R-devel@r-project.org mailing lis

Re: [Rd] vignette question was: CRAN package sizes

Please excuse the noise about dummy .Rnw. On 02/15/2011 03:44 PM, Claudia Beleites wrote: Also I started doing my homework with regards to package size, and that is mainly cleaning leftovers from vignette generation and compressing the pdfs. For most of my vignettes, ghostscript (lossy

[Rd] vignette question was: CRAN package sizes

desired results. Thanks a lot for any ideas, Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

[Rd] drop argument for apply, rowSums, etc.

ncionality, he can find it here. Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it # From base/R/colSums.R .colSums <-

Re: [Rd] dependencies on system packages

Dear all, From the writing extensions manual: "Other dependencies (external to the R system) should be listed in the ‘SystemRequirements’ field, possibly amplified in a separate README file." I guess one problem is the user may not realize that the -dev version is needed, and just sees libxml

[Rd] Google Summer of Code 2011

Dear all, I just saw that Google Summer of Code 2011 is announced: http://www.google-melange.com/ Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei

Re: [Rd] plotmath indices: suggested addition to help file

edX = mc->CurrentX; double savedY = mc->CurrentY; @@ -1407,6 +1409,7 @@ s5 = TeX(sigma5, gc, dd); s16 = TeX(sigma16, gc, dd); SetSubStyle(style, mc, gc); +sub = LCONS (list, sub); subBBox = RenderElement(sub, 0, mc, gc, dd); v = max(max(v, s16), bboxHeight(s

[Rd] plotmath indices: suggested addition to help file

the output works for ? However, I suggest to announce the fact that only the first parameter is printed in plotmath.Rd. E.g. in the table l. 72 \code{x[i]} \tab x subscript i; escape further indices (\code{x ["i, j"]})\cr Claudia -- Claudia Beleites Dipartimento dei Materiali e de

Re: [Rd] R vs. C

l La version française suit le texte anglais. -------- This email may contain privileged and/or confidential ...{{dropped:25}}

Re: [Rd] R vs. C now rather: how to ease package checking

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Re: [Rd] GPL and R Community Policies (Rcpp)

__ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0

[Rd] Vignette Questions

old computer where I didn't install those packages but that's quite a hassle. Thank you very much for your kind help! Claudia Beleites -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Valerio 2 I-34127 Trieste ITALY email: cb

Re: [Rd] SweaveInput + keep.source = TRUE trouble

think the changes to implement that are too large to consider in a beta. Duncan Murdoch On 05/10/2010 5:38 AM, Claudia Beleites wrote: Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken

Re: [Rd] SweaveInput + keep.source = TRUE trouble

attached base packages: [1] stats graphics grDevices utils datasets methods base Claudia Beleites wrote: Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken from too far down the

Re: [Rd] Does anyone use Sweave (RweaveLatex) option "expand=FALSE"?

r know. It may come handy some day also for me. I'll be a great fan of errors reported with line number! And if the reporting isn't that convenient in expand = FALSE chunks, it still helps a lot in many, many expanded chunks, right?. My 2 ct, Claudia -- Claudia Beleites Dipart

Re: [Rd] Does anyone use Sweave (RweaveLatex) option "expand=FALSE"?

I never used it. I got curious, though. What would be a situation that benefits of this option? Maybe a use case could be found by "brute force" (grep all .Rnw files on CRAN for the option? Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Univer

Re: [Rd] prompt () and backticks for default arguments

cutoff= 500L, > backtick = TRUE), (Did I get right that this is waht I'm supposed to do?) Best regards & thanks again, Claudia Prof Brian Ripley wrote: On Tue, 17 Aug 2010, Claudia Beleites wrote: Dear all, I just noticed, that prompt (

[Rd] prompt () and backticks for default arguments

ound by R CMD check as syntax error. While this is easily fixed if the .Rd is further edited manually, I stumbled over it using the automated .Rd generation with inlinedocs - in this combination it is very inconvenient. Any suggestions? All the best, Claudia -- Claudia Beleites Dipartimento de

Re: [Rd] [R] cacheSweave / pgfSweave driver for package vignette

e one myself. I think they could be helpful here to switch between the "development checks" and a complete build & check. So I'd be very curious to see some make files. HTH, Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università

Re: [Rd] rbind on data.frame that contains a column that is also a data.frame

Dear all, I also use matrices inside data.frames in my (S4) class "hyperSpec". So, yes, it would be great if commands like apply would work as straightforward as e.g. rbind does on such data.frames. The problem here seems to me different, though: Is it possible that the relevant difference betwe

[Rd] suggestion for sweep help page

of the same size. into the help page to clarify what input FUN should expect. Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

Re: [Rd] S4 dispatch for .DollarNames (utils)

John, Thank your for the explanation! Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

Re: [Rd] S4 dispatch for .DollarNames (utils)

hey seem to work just fine without first setting up a dummy S3 class that is then used in the contains of the S4 definition. Any pitfalls with that? Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 T

Re: [Rd] dots for sample --> "implicitGeneric"

Dear Martin, Martin Maechler wrote: "CB" == Claudia Beleites on Sun, 28 Feb 2010 19:31:42 +0100 writes: CB> Dear R-Developers, CB> could 'sample' gain a ... argument? As you may know, adding '...' also has drawbacks, most notably that you

[Rd] dots for sample

dom sample. For the moment, I use SetGeneric to add the dots argument, but this of course gives a warning that the base function sample is overwritten (and my colleagues are almost as scared of warnings as of errors...) Thanks, Claudia -- Claudia Beleites Dipartimento dei Materiali e del

Re: [Rd] [SoC] R and Google Summer of Code 2010: Call for Proposals -

ojects:gsoc2010 to stick with the common 'GSoC' acronym. So go ahead and submit ideas! Dirk -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0

[Rd] Sweave errors during package building

ow run LaTeX on 'testsweave.tex' > a [1] 3 > b [1] 1 > -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 0 40 5 58-37 68 email: cbelei...@units.it

Re: [Rd] "Roxygenating" packages

Dear Barry, I'd definitely be interested. Though I don't have time to do it :-( But I'd volunteer as test user :-) --Claudia > Is there any interest in a method of taking a package with > documentation in Rd files and attaching it to package R files in > Roxygen format? I can see a few problems

Re: [Rd] ... (dotMethods) and cbind/rbind: how to give the signature?

Dear Oleg, thanks a lot! I'll have S3 methods until the problems settle somehow. I wasn't aware that S3 despatch works for S4 classes as well. Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6

Re: [Rd] methods vs. functions

Dear Duncan and Oleg, thanks for your answers. For the moment, I'll use functions. Happy new year, Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 (0 40) 5 58-34 47

[Rd] methods vs. functions

some functions, that should not be methods of the class). Any comments? Thanks a lot! Claudia -- Claudia Beleites Dipartimento dei Materiali e delle Risorse Naturali Università degli Studi di Trieste Via Alfonso Valerio 6/a I-34127 Trieste phone: +39 (0 40) 5

[Rd] ... (dotMethods) and cbind/rbind: how to give the signature?

inux-gnu arch i486 os linux-gnu system i486, linux-gnu status major 2 minor 8.0 year 2008