Dear All:
stepping in late, but @Joris, if you would like to take 'from a single file'
literally,
have a look at:
https://github.com/bpfaff/lp4rp
(lp4rp: literate programming for R packages);
Cheers,
Bernhard
ps: incidentally, within the noweb-file roxygen is employed.
-Ursprün
On 25.11.2011 11:56, Pfaff, Bernhard Dr. wrote:
> Dear R-Devel subscriber,
>
> I would like to raise a topic and ask for your advice, guidance.
> Today on R-help an issue with a certain package popped up that has been
> removed from CRAN, because it failed the checks and/or the d
Dear R-Devel subscriber,
I would like to raise a topic and ask for your advice, guidance.
Today on R-help an issue with a certain package popped up that has been removed
from CRAN, because it failed the checks and/or the dependencies are not any
longer available. The package maintainer has been
>
> On Thu, 21 Apr 2011, Pfaff, Bernhard Dr. wrote:
>
> > Dear list subscriber,
> >
> > I am quite puzzled by the behaviour of processing Sweave
> files within an R session, i.e.
> > Sweave("foo.Rnw") versus R CMD Sweave foo.Rnw
&g
Dear list subscriber,
I am quite puzzled by the behaviour of processing Sweave files within an R
session, i.e.
Sweave("foo.Rnw") versus R CMD Sweave foo.Rnw
In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT = TRUE' is
obeyed (this is set in etc/Renviron.site as well as under t
Dear list subscriber (R-Core),
there is a minor typo in the Windows specific NEWS for R 2.9.0:
http://cran.at.r-project.org/bin/windows/base/CHANGES.R-2.9.0
There is no function 'memory.limits() but memory.limit() (see below).
Secondly, I am kind of irritated by the function's behaviour. It re
chaft: Frankfurt am Main
>-Ursprüngliche Nachricht-
>Von: r-devel-boun...@r-project.org
>[mailto:r-devel-boun...@r-project.org] Im Auftrag von Pfaff,
>Bernhard Dr.
>Gesendet: Freitag, 30. Januar 2009 12:13
>An: r-devel@r-project.org
>Betreff: [Rd] Methods not loaded
Dear list-member,
I am currently developing a package with S4 classes. The NAMESPACE and
DESCRIPTION is printed below. Within this package I have set a method
"residuals" for two classes. In version 2.8.1 these two are reported whereas in
R-Devel (2009-01-28 r47766). What have I missed? What ha
Just to let the list know; the issue has been resolved by Simon Urbanek,
again many thanks Simon. His reply is available at:
https://stat.ethz.ch/pipermail/r-sig-mac/2009-January/005759.html
Best,
Bernhard
>
>Dear list member,
>
>the package urca now contains FORTRAN code in ./src. The
>compil
Dear list member,
the package urca now contains FORTRAN code in ./src. The
compilation/build works on R-Forge (see project AICTSI with Leopard),
but an error is reported in the build on CRAN (Tiger). My question now
is: Is there anything I can do as a package maintainer such that the
package can b
;Gesendet: Donnerstag, 23. Oktober 2008 02:36
>An: Peter Dalgaard
>Cc: Pfaff, Bernhard Dr.; [EMAIL PROTECTED]
>Betreff: Re: [Rd] R 2.8.0 qqnorm produces error with object of
>class zoo?
>
>I don't think its hopeless. order works ok provided the
>underlying class
>define
Best,
Bernhard
>
>Pfaff, Bernhard Dr. wrote:
>> It seems, that in my previous emails the attached output
>files got deleted, hence these are now copied below:
>>
>>
>(If the MIME type is wrong, then that will happen.)
>
>Anyways, the root cause seems to be th
It seems, that in my previous emails the attached output files got deleted,
hence these are now copied below:
For R version 2.7.2:
R version 2.7.2 (2008-08-25)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
R ist freie Software und kommt OHN
Dear list-reader,
by running the following script:
library(zoo)
sessionInfo()
search()
packageDescription("zoo")
data(EuStockMarkets)
dax <- as.zoo(EuStockMarkets[1:10, "DAX"])
daxr <- diff(log(dax))
identical(as.vector(qnorm(daxr)), qnorm(coredata(daxr)))
qqnorm(coredata(daxr))
qqnorm(daxr)
qq
Hello Arne,
I do not know if this matters, but have you used 'results = verbatim' in your R
code chunk? See page 13 in:
http://www.statistik.lmu.de/~leisch/Sweave/Sweave-manual.pdf
Best,
Bernhard
>
>Hi,
>
>I want to have a "vignette" in one of my R packages. Hence, I
>added an Sweave
>file i
>I get the same behaviour in 2.4.1 with xtable 1.4-3. Have you
>perhaps updated 'xtable' as well as R and are blaming R for an
>'xtable'
>change? As ?print.xtable says
>
> From version 1.4-3, all non-numeric columns are
>sanitized, and all
> LaTeX special characters are sanitised fo
Dear R-Devel subscriber,
I encountered the following problem for tex-formatted table with xtable().
Suppose I do want the following matrix as a table in LaTeX:
library(xtable)
a11 <- "\\color{green}\\textbf{big green}"
a21 <- "\\color{red}\\textbf{big red}"
a12 <- "\\color{green}green"
a22 <- "\
>On Wed, 22 Nov 2006, Pfaff, Bernhard Dr. wrote:
>>
>> \alias{show, equation-method}
>
>There are no spaces in the examples in Writing R Extensions,
>so I would
>not have assumed they are allowed. Does it work without the
>space? (If
>it supposed to, we ne
Dear R-Devel subsriber,
during the set-up of a package with a NAMESPACE I stumbled over the
following warning during:
R CMD check -l c:/R/package smem
## skipped output
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic 'show' and siglist 'equation'
All u
>> spend more time on this. I really don't mind using the
>previous version.
Hello Derek,
or upgrade to R 2.5.0dev; the execution of your code snippet is not
hampered by memory issues:
> sessionInfo()
R version 2.5.0 Under development (unstable) (2006-10-10 r39600)
i386-pc-mingw32
locale:
L
Dear John, Dear Seth,
many (a thousands) thanks for your clarification and highlighting of the
problem.
>It's not a simple serialization issue, but related to the initial
>computations when a saved image is reloaded at the start of a session,
>so the implication is less general than you imply.
Sorry, to bother the list one more time: but the following worked at
least for 'urca':
in NAMESPACE I now included explicitly:
import(methods)
a fix of the 'urca'-package will be uploaded to CRAN on the weekend.
Fritz, will this work for ypur package 'flexclust' too? I have in my
DESCRIPTION imp
Dear R-Devel subscriber,
as a follow up to my yesterday's email: I tested an analogous example
with the S4-package "flexclust" by executing the following code:
library(flexclust)
example(cclust)
cl
After saving the work space and starting a new R process with the
restored work space, the same be
Dear R-Devel subscriber,
I was hinted to the following problem with package 'urca':
If one starts R and executes for instance:
> library(urca)
> example(ur.df)
## output as expected, but omitted here
> class(lc.df)
[1] "ur.df"
attr(,"package")
[1] "urca"
> class(summary(lc.df))
[1] "sumurca"
att
Dear R-maintainer,
in the help-file for 'regexp' I detected the following word redundancy:
Is:
===
For basic and extended regular expressions the the collation order is
taken from the OS's ...
^^^
Should read:
For basic and extended reg
Dear list-subscriber,
in the process of writing a general code snippet to extract coefficients
in an expression (in the example below: 0.5 and -0.7), I stumbled over
the following peculiar (at least peculiar to me:-) ) sorting behaviour
of the function all.names():
> expr1 <- expression(x3 = 0.5
>> "PaulG" == Paul Gilbert <[EMAIL PROTECTED]>
>> on Tue, 29 Aug 2006 09:55:09 -0400 writes:
>
>PaulG> Martin Maechler wrote:
>>> ...
>>>
>>> The idea was a field related to but weaker than 'Suggests' :
>>> Something like
>>> 'canMakeUseOf: [, , ... ]
>>> w
>>>>> "BernPf" == Pfaff, Bernhard Dr <[EMAIL PROTECTED]>
>>>>> on Wed, 26 Apr 2006 08:28:34 +0100 writes:
BernPf> Dear Andy, Uwe and remaining list subscribers,
BernPf> now, coming closer to the evil's root. Yesterday, I s
he environment is handeld/passed
differently for standard and additional libraries? Would this odd
behaviour qualify as a bug?
Best,
Bernhard
From: Uwe Ligges
>
> Pfaff, Bernhard Dr. wrote:
>
> > Pfaff, Bernhard Dr. wrote:
> >
> >
> >>Pfaff, Be
Pfaff, Bernhard Dr. wrote:
> Pfaff, Bernhard Dr. wrote:
>
>
>>Dear R-Devel subscriber,
>>
>>first, let me express my thank to the R-Core team for the new release!
>
> I
>
>>appreciate their efforts and time spent to enhance R.
>>In accordan
Pfaff, Bernhard Dr. wrote:
> Dear R-Devel subscriber,
>
> first, let me express my thank to the R-Core team for the new release!
I
> appreciate their efforts and time spent to enhance R.
> In accordance with the 'NEWS' file (see excerpt of it below),
>
> [...
Dear R-Devel subscriber,
first, let me express my thank to the R-Core team for the new release! I
appreciate their efforts and time spent to enhance R.
In accordance with the 'NEWS' file (see excerpt of it below),
[...
o Changed the environment tree to be rooted in an empty
environ
Dear R-Core member,
I spotted the following minor typo in:
https://svn.r-project.org/R/trunk/src/library/stats/man/optim.Rd
currently:
==
\details{
[...]Conjugate gradient methods will generally be more fragile that the BFGS
method, [...]
}
Should read:
\details{
[...]Con
> Jeff Enos schrieb:
>
>> R-devel,
>>
>> I'm interested in looking at some examples of existing R packages that
>> rely heavily on S4 classes to get a feel for varying styles and
>> package organization techniques. Could you recommend any packages
>> that might serve as a good starting point?
>>
>
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