Re: [Rd] R 2.12.0 beta (r53110) fails make check on Ubuntu hardy

2010-10-04 Thread it-r-devel
Thanks for the quick answer. We will use the builtin BLAS then. Matthias Prof Brian Ripley wrote, On 10/04/10 15:17: > So your system has a broken BLAS and you need to use the builtin one. > > On Mon, 4 Oct 2010, it-r-de...@ml.epigenomics.com wrote: >> >> Hi! [...] -- Matthias Burger

Re: [Rd] RUnit bug?

2010-04-22 Thread it-r-devel
Romain has already given you the answer. As would have the help page ?defineTestSuite Not a bug, but a user error, I assume. Matthias Dominick Samperi wrote, On 04/22/10 02:19: > There appears to be a bug in RUnit. > > Given a testsuite testsuite.math, say, when I run: > > runTestSuite(test

[Rd] R 2.5.0 devel try issue in conjuntion with S4 method dispatch

2007-03-15 Thread ml-it-r-devel
Hi, after updating R 2.5.0 devel yesterday we today observed many new unexpected failures in our daily package build and test system runs, which can be traced to recent changes in the implementation in try() (as noted in NEWS). Investigating this new implementation I come across an issue in con

Re: [Rd] R 2.5.0 devel try issue in conjuntion with S4 method dispatch

2007-03-20 Thread ml-it-r-devel
Peter Dalgaard wrote: > Matthias Burger wrote: >> Hi Seth, >> > [...] >> > I have just committed my variation of Seth's patch, so please check the > current r-devel too. For the record: With R 2.5.0 devel (2007-03-18 r40854) the issue I was concerned about has been resolved. Thanks t

[Rd] ifelse behaviour

2007-04-26 Thread ml-it-r-devel
Hi! I'm puzzled by the return value of ifelse consider x<-integer(0) ifelse(is(x, "character"), paste(x), x) [1] NA whereas if (is(x, "character")) return(paste(x)) else x [1] integer(0) or x<-integer(1) ifelse(is(x, "character"), paste(x), x) [1] 0 work as I had anticipated. Is this correct

Re: [Rd] ifelse behaviour

2007-04-26 Thread ml-it-r-devel
Duncan Murdoch wrote: > On 4/26/2007 9:53 AM, [EMAIL PROTECTED] wrote: >> Hi! >> >> I'm puzzled by the return value of ifelse >> >> consider >> >> x<-integer(0) >> ifelse(is(x, "character"), paste(x), x) >> [1] NA > > The test evaluates to a length 1 logical vector containing FALSE. So > ifelse(

[Rd] getNamespaceExports("base") error

2007-05-15 Thread ml-it-r-devel
Hi! >getNamespaceExports("base") Error in ls(NULL, all = TRUE) : using 'as.environment(NULL)' is defunct getNamespaceExports function (ns) { ns <- asNamespace(ns) if (isBaseNamespace(ns)) ls(NULL, all = TRUE) else ls(getNamespaceInfo(ns, "exports"), all = TRUE) } One p

Re: [Rd] getNamespaceExports("base") error

2007-05-15 Thread ml-it-r-devel
Prof Brian Ripley wrote: > It would seem more logical to use x. Today it has the > same contents as baseenv() (but a different enclosing env), but that may > change. > > I do wonder why you are using this: the R code clearly doesn't. For > base is not a normal namespace and is automatically im

[Rd] R (2.9.0 rc) CMD INSTALL will leave OOLOCK folder even if installation succeeded

2009-04-16 Thread ml-it-r-devel
Hi, since a couple of days ago I see failures when using R CMD INSTALL -l lib path-to-src/pkg.tar.gz This occurs in automated library updating via a shell script and is caused by the immediate preceding call to leave an 00LOCK folder even though the package installation of that call succeeded.

[Rd] R devel repository tarball naming issue

2009-09-01 Thread ml-it-r-devel
Hi, we noticed that since some time after Aug 24th the daily snapshots provided on ftp://ftp.stat.math.ethz.ch/Software/R/ no longer have their default tarball file name but dropped the date stamp, i.e. R-devel_.tar.bz2 Same for R-patched snapshots. Could one of the maintainers please take a

Re: [Rd] Link to pdf documentation from other package ?

2009-11-18 Thread ml-it-r-devel
Ulrike Grömping wrote, On 11/18/09 13:28: > Duncan Murdoch schrieb: >> Ulrike Groemping wrote: >>> >>> Duncan Murdoch-2 wrote: >>> Ulrike Groemping wrote: > Dear developeRs, > > I have not found anything recent about how to link to a vignette or > other > document

[Rd] methods::is problem in R 2.7.0 & R 2.8.0 devel

2008-04-16 Thread ml-it-r-devel
Hi, x <- 1L class(x) <- c("myInt", "integer") is(x) Error in inherits(x, "factor") : argument "class2" is missing, with no default The problem arises when is() is used with only one argument (object) which has more than one class reported by class(object). In the code is() does use variable "c

[Rd] R 2.9.0 devel: package installation with configure-args option

2009-03-03 Thread ml-it-r-devel
Hi, trying to install a package containing C code and requiring non-default configure argument settings the incantation (this has worked for R <= 2.8.1 on the same architectures) R CMD INSTALL --configure-args="--with-opt1 --with-opt2" packname does always result in a warning Warning: unknown

Re: [Rd] methods package

2009-03-05 Thread ml-it-r-devel
Terry Therneau wrote: > I'm working on the next version of coxme, one step of which is converting > the bdsmatrix library from Splus to R. Actually, it is a conversion from > S4 methods as first described in the Green book to S4 methods as they > currently exist. Mostly it's going ok, but not

Re: [Rd] R 2.9.0 devel: package installation with configure-args option

2009-03-06 Thread ml-it-r-devel
Prof Brian Ripley wrote: > I think this should now work (one of several 'FIXME' issues addressed in > the latest commit -- there are still some to go, but 2.9.0 is not due > for 6 weeks). tested and confirmed with R devel revision r48059; more than one configure arguments are now handled correctly