Re: [R] Creating a Matrix from a vector with some conditions

2011-01-09 Thread baptiste auguie
Hi, embed() seemed well-suited, but I couldn't figure out an elegant way to use it embed(c(A,A), 4)[1:4, 4:1] HTH, baptiste On 6 January 2011 22:34, ADias diasan...@gmail.com wrote: Hi Suppose we have an object with strings: A-c(a,b,c,d) Now I do: B-matrix(A,4,4, byrow=F) and I

Re: [R] Operating on count lists of non-equal lengths

2011-01-09 Thread Dennis Murphy
Hi: This is an abridged version of the reply I sent privately to the OP. Generate an artificial data frame # function to randomly generate one of the Q* columns with length 1000 mysamp - function() sample(c(-1, 0, 1, NA), 1000, prob = c(0.35, 0.2, 0.4, 0.05), replace = TRUE) # use above

Re: [R] how to calculate this natural logarithm

2011-01-09 Thread cgw
You could re-do part of your code to run with mpfr-class variables, and use this function: # mpfr choose(n,k) rmpfac-function(n,k,prec=50) factorial(mpfr(n,prec))/factorial(mpfr(k,prec))/factorial(mpfr(n-k,prec)) Converting into and out of mpfr may not be worth it, but you

[R] Post hoc analysis for ANOVA with repeated measures

2011-01-09 Thread Frodo Jedi
Dear all, how can I perform a post hoc analysis for ANOVA with repeated measures (in presence of a balanced design)? I am not able to find a good example over internet in R...is there among you someone so kind to give me an hint with a R example please? For example, the aov result of my

[R] Bartlett HAC covariance matrix estimator

2011-01-09 Thread Xuefeng Wu
Dear everyone: I am doing a research on several stock markets. And I need to construct an Bartlett HAC covariance matrix estimator for Sigma(Cov(Y0,Yj)), j is from 0 to T. Can you tell me how to do it. Your Sincerely! Nigel Gregory 01/09/11

Re: [R] Post hoc analysis for ANOVA with repeated measures

2011-01-09 Thread David Winsemius
My suggestion is that you take the weekend lull in readership to now read the Posting Guide which it appears you nave not yet done. Had you done so you should have encountered the advice about how to successfully attach data files. (None came through.) You would also have read the request

Re: [R] Heat map in R

2011-01-09 Thread Juliet Hannah
Make sure your data is a matrix. There are many examples of expression heatmaps available on the bioconductor list. After checking out these examples, I would post to the bioconductor list if you are still having problems. Also consider a small example to get you a working heatpmap. You have to

Re: [R] Different LLRs on multinomial logit models in R and SPSS

2011-01-09 Thread Sören Vogel
Hello, thanks for all your replies, it was a helpful lesson for me (and hopefully for my colleagues, too). Bests, Sören On 11-01-07 11:23, David Winsemius wrote: Date: Fri, 7 Jan 2011 11:23:04 -0500 From: David Winsemius dwinsem...@comcast.net To: sovo0...@gmail.com Cc: r-help@r-project.org

Re: [R] Post hoc analysis for ANOVA with repeated measures

2011-01-09 Thread RICHARD M. HEIBERGER
Please read the maiz example in HH install.packages(HH) library(HH) ?MMC Read all the way to the end of the maiz example. On Sun, Jan 9, 2011 at 7:10 AM, Frodo Jedi frodo.j...@yahoo.com wrote: Dear all, how can I perform a post hoc analysis for ANOVA with repeated measures (in presence of a

[R] question about the chow test of poolability

2011-01-09 Thread amatoallah ouchen
Good day R-listers, My question is more a statistical question than an R related question, so please bear with me i'm currently applying the chow test of poolability in fact i'm working with panel N=17 T=5 , and my model looks like this : Yit= a0+B1X1+B2X2+B3X3+B4X4+eit My question is the

[R] Lattice, combine histogram and line graph

2011-01-09 Thread Jim Burke
Hello everyone, I have a simple histogram of gasoline prices going back a few years that I want to insert a line graph of consumer price index (cpi) over the histogram. I have looked through the Lattice book by Deepayan Sarkar but don't see anything there. How might this be done? An example

[R] Aggragating subsets of data in larger vector with sapply

2011-01-09 Thread rivercode
Have 40,000 rows of buy/sell trade data and am trying to add up the buys for each second, the code works but it is very slow. Any suggestions how to improve the sapply function ? secEP = endpoints(xSym$Direction, secs) # vector of last second on an XTS timeseries object with multiple entries

[R] R Audio Problems when using Vista/Windows 7

2011-01-09 Thread d10sfan
Ive been trying to help someone with using R scripts with audio on Windows Vista/7. The problem is that all the packages Ive tried fail to work properly when being used on Windows 7. I couldnt get audio to work at all. It kept coming up with the message that wmm output could not happen. Worked

[R] Shortcut key to get to beginniing of line in R?

2011-01-09 Thread casshyr
This is a generalize question: basically, say you are typing a long line of command in R console, and then you realize you forgot to add something in the beginning, is there a way to get to the beginning of the line without pressing the left key on the keyboard and waiting for the cursor to get

[R] Getting total bar's label value labels in a barplot

2011-01-09 Thread Luca Meyer
Hi, I have been trying to get the label under the total column - i.e. a mean value of columns 2 to 6 - in a barplot I generate with this script: t1 - tapply(A, B, sum) t1[8] - mean(t1[2:6]) t1 - as.table(t1) barplot(t1, ylim=c(0,3000)) mtext(Var1, side = 1, line = 3) mtext(Var2, side = 2, line

Re: [R] Shortcut key to get to beginniing of line in R?

2011-01-09 Thread Jim Holtman
try home or better yet use a text editor and cut/paste your command; let you type a lot of shorter lines that are more readable and easy to change. Sent from my iPad On Jan 9, 2011, at 16:00, casshyr cass...@hotmail.com wrote: This is a generalize question: basically, say you are typing a

Re: [R] Lattice, combine histogram and line graph

2011-01-09 Thread David Winsemius
On Jan 9, 2011, at 8:13 PM, Jim Burke wrote: Hello everyone, I have a simple histogram of gasoline prices going back a few years that I want to insert a line graph of consumer price index (cpi) over the histogram. I have looked through the Lattice book by Deepayan Sarkar but don't see

Re: [R] Shortcut key to get to beginniing of line in R?

2011-01-09 Thread David Winsemius
On Jan 9, 2011, at 4:00 PM, casshyr wrote: This is a generalize question: basically, say you are typing a long line of command in R console, and then you realize you forgot to add something in the beginning, is there a way to get to the beginning of the line without pressing the left

Re: [R] Shortcut key to get to beginniing of line in R?

2011-01-09 Thread Jason Edgecombe
On 01/09/2011 04:00 PM, casshyr wrote: This is a generalize question: basically, say you are typing a long line of command in R console, and then you realize you forgot to add something in the beginning, is there a way to get to the beginning of the line without pressing the left key on the

Re: [R] Getting total bar's label value labels in a barplot

2011-01-09 Thread David Winsemius
Try looking at the barplot function and notice that is should be returning values for the mid-points. You should use those instead of the at=values On Jan 9, 2011, at 12:03 PM, Luca Meyer wrote: Hi, I have been trying to get the label under the total column - i.e. a mean value of

Re: [R] Aggragating subsets of data in larger vector with sapply

2011-01-09 Thread Jim Holtman
split the data by truncating the time to a second, then process each group. this will save the subsetting you are doing. also merge the data with direction and size in the same frame. it looks like you can subset by buy to begin with. Sent from my iPad On Jan 9, 2011, at 19:10, rivercode

Re: [R] Lattice, combine histogram and line graph

2011-01-09 Thread Joshua Wiley
Hi Jim, Some example data would help us. I typically think of a histogram as the frequency of values falling within a certain range (determined by bins). Since they are univariate plots, I'm not sure how you are planning on adding a line graph to that. If you just want bars of the average

Re: [R] Normal Distribution Quantiles

2011-01-09 Thread Michael Bedward
Just to add to the silly solutions, here's how I would have done it... mu - 40 sdev - 10 days - 100:120 # range to explore p - 0.8 days[ match(TRUE, qnorm(0.2, mu*days, sqrt(sdev * sdev * days)) = 4000) ] Michael On 9 January 2011 08:48, Bert Gunter gunter.ber...@gene.com wrote: If I

Re: [R] Lattice, combine histogram and line graph

2011-01-09 Thread Gabor Grothendieck
On Sun, Jan 9, 2011 at 8:13 PM, Jim Burke j.bu...@earthlink.net wrote: Hello everyone, I have a simple histogram of gasoline prices going back a few years that I want to insert a line graph of consumer price index (cpi) over the histogram.  I have looked through the Lattice book by Deepayan

Re: [R] Anova with repeated measures for unbalanced design

2011-01-09 Thread Frodo Jedi
Dear list members, I extensively searched in the previous threads of this mailing list an example easy to understand for me, and able to fit my problem, but I didn´t succed to find a solution for which I feel certain. At the moment I am stuck with this solution for my unbalanced design, and I

Re: [R] Lattice, combine histogram and line graph

2011-01-09 Thread Jim Burke
Thanks Josh, Gabor, and David, I appreciate your suggestions and the time you took to think about this. This was all most helpful. Gabor I will look at the zoo package soon. Sounds interesting. Below is what worked for me from Josh to overlay a line graph on a histogram. obj1 - xyplot(

Re: [R] Operating on count lists of non-equal lengths

2011-01-09 Thread Kari Manninen
Dear Dennis, Thank you so very much for your quick reply. What an introduction to R-help!! Especially I appreciated the time you put to explain the code privately. After a few hick-ups I got it working on my data as well. Regards, - Kari Quoting Dennis Murphy djmu...@gmail.com: Hi:

Re: [R] Problems with glht function for lme object

2011-01-09 Thread anord
Dear all, Thanks for your input. It works fine now. All it took was for me to tidy up the workspace. Simple solution, that I should have considered earlier. Regards, Andreas -- View this message in context:

Re: [R] Normal Distribution Quantiles

2011-01-09 Thread Rainer Schuermann
Altogether I got five more or less silly solutions (not my judgment!), some of them further discussed in private mail, for a problem where my expectation was to get a simple one-liner back: Check ?clt or so... Fortunately, with all of them I seem to arrive at a result that is consistent with

Re: [R] YourCast Data Format

2011-01-09 Thread Dieter Menne
Thomas Jensen-6 wrote: ... data set ... The data set has in total 27 countries for the years 1999 to 2008, but with unbalanced panels. I want to be able to estimate a model and do forecasting for each country in the data set. I have been looking into the YourCast package from

[R] Getting stable solution while applying 3 parameter model (tpm) on response data

2011-01-09 Thread Maulik Shah
I have started exploring potential of R in applying IRT to a dataset. I have a data of about 20k students who took a Maths test, a diagnostic in nature. I find that I don't get stable solution while using tpm() even after passing an argument start.val = RANDOM. What should be done in this case to

[R] Capturing error messages while running R through an external program

2011-01-09 Thread Maulik Shah
I am trying to automate scoring done by applying 3 parameter model of IRT to the response data. I call R from PHP to do this using exec(). Since I face convergence issues while using R, it is important that the program captures the error messages like the solution is not stable given by R while

[R] Step command failing for lm function

2011-01-09 Thread Noah Silverman
Hi, I have a fairly simple linear regression using the lm function. There are about 100 variables and 30,000 rows of data. It runs fine and produces a decent looking R2 value. I'm interested in performing a stepwise variable selection to see if things can be cleaned up a bit. Calling the step