Thanks Jim for your reply. I've split the dataset into indices but am now
having problem with my function. The function I need to use is in two parts:
H.scv - Hscv(idh, pilot = unconstr) ## commands from the ks package
KDE - kde(idh, H=H.scv, approx.cont=TRUE)
I've tried to write these as
Without write access to the SQL database, you cannot merge data from both
sources within the SQL query. You can use paste to build a list of literal
strings that you can refer to in the SQL where clause with IN, pull the results
into R, then use the merge function to combine the data frames in
On 23-Jan-2012 Kevin Burton wrote:
I have some data where the frequency is heavily weighted
on the lower end. So I have lots of low values with very
few higher values. I would like to find breakpoints that
cover the data with as much detail as possible. I find
that if I use hist() to
Dear Soren,
I would try adding the new variable to the dataset and use the data = argument
of lm
foo - function(mod, data){
data$y3 - c(1,3,3,4,6)
update(mod, y3 ~ ., data = data)
}
x - 1:5
y - c(1,2,3,3,6)
dataset - data.frame(x = x, y = y)
mm - lm(y~x, data = dataset)
foo(mm, dataset)
I new in R programming language.
I have some time data
time
[1] 2005-01-03 05:11:39 UTC 2005-01-03 06:36:02 UTC 2005-01-03
06:36:55 UTC
[4] 2005-01-03 06:37:00 UTC 2005-01-03 06:38:04 UTC 2005-01-03
06:38:04 UTC
[7] 2005-01-03 06:38:04 UTC 2005-01-03 06:38:04 UTC 2005-01-03
06:38:05 UTC
Le lundi 23 janvier 2012 à 00:35 -0800, uday a écrit :
I new in R programming language.
I have some time data
time
[1] 2005-01-03 05:11:39 UTC 2005-01-03 06:36:02 UTC 2005-01-03
06:36:55 UTC
[4] 2005-01-03 06:37:00 UTC 2005-01-03 06:38:04 UTC 2005-01-03
06:38:04 UTC
[7]
Hi
Error in data.frame(, check.names = FALSE)
Hi Petr,
I have added for loop for previous code. Some error is coming as “error
in data.frame(, check.names = FALSE): arguments has different counts
of rows: 0, 18” for the following code.
Can you please help?
Probably
Hi
I new in R programming language.
I have some time data
time
[1] 2005-01-03 05:11:39 UTC 2005-01-03 06:36:02 UTC 2005-01-03
06:36:55 UTC
[4] 2005-01-03 06:37:00 UTC 2005-01-03 06:38:04 UTC 2005-01-03
06:38:04 UTC
[7] 2005-01-03 06:38:04 UTC 2005-01-03 06:38:04 UTC 2005-01-03
On 01/23/2012 07:35 PM, uday wrote:
I new in R programming language.
I have some time data
time
[1] 2005-01-03 05:11:39 UTC 2005-01-03 06:36:02 UTC 2005-01-03
06:36:55 UTC
[4] 2005-01-03 06:37:00 UTC 2005-01-03 06:38:04 UTC 2005-01-03
06:38:04 UTC
[7] 2005-01-03 06:38:04 UTC 2005-01-03
Hi,
On the R side, you may want to have a look at the AtelieR package. It's
a GTK GUI which gives you a simple interface to some common Bayesian
tests (on a proportion, on a variance, on a mean, on mean and variance
jointly, on several proportions, on contingency tables, on several means).
On 23/01/2012, at 13:31 PM, Nevil Amos wrote:
I have an anova.cca() output.
If it is possible I would like to extract the table it contains as a data
frame
ie
myAnova
Permutation test for rda under reduced model
Terms added sequentially (first to last)
Model: rda(formula =
If 'idh' is the set of indices resulting from the 'split', then your
function would probably have to look like this:
myfun - function(x){
H.scv - Hscv(data[x, ], pilot = unconstr)
KDE - kde(data[x, ], H=H.scv, approx.cont=TRUE)
}
This is based on your original example where 'data' was the object
Dear list,
I gave up trying to fix my movie3d (rgl library) issue in my PC
(completely black gif/png file) and went ahead and installed MacPorts
and ImageMagick onto my iMac (OSX ver 10.6.8). I think ImageMagick is
successfully installed in its default location (under /opt/local), and
I ran
Hi all,
A small problem raising.
Suppose the follow raw data is stored in a csv file. And the error is coming
as NULL with the following code.
Can you please help?
Thank you in advance.
SUBJCET
1Ito
1Ito
1Ito
1Ito
1Ito
1Ito
I have an anova.cca() output.
If it is possible I would like to extract the table it contains as a data frame
ie
myAnova
Permutation test for rda under reduced model
Terms added sequentially (first to last)
Model: rda(formula = mygenind@tab ~ mds3dCS_NULL + mds3dTRE_25_2_CS25 +
Below I have pasted the outputs of an ordistep() on an rda()
I noticed in the final fitting of the ordistep() that two terms
mydata$TreeCov and mydata$HabConfig were still included but had variance of
0 and therefore P was not calculated.
Why are they still included in the final model?
There's no column in FD named SUBJECT
In your example data it's named SUBJCET, not the same.
It's also possible that R didn't automatically recognize the first row
as column names, and you need to add header=TRUE to the read.csv()
command.
In either case, you can see the actual column names of
On 12-01-23 8:11 AM, Sri krishna Devarayalu Balanagu wrote:
Hi all,
A small problem raising.
Suppose the follow raw data is stored in a csv file. And the error is coming
as NULL with the following code.
Can you please help?
Thank you in advance.
SUBJCET
You have a typo in the heading line.
On 12-01-23 8:50 AM, Manabu Sakamoto wrote:
Dear list,
I gave up trying to fix my movie3d (rgl library) issue in my PC
(completely black gif/png file) and went ahead and installed MacPorts
and ImageMagick onto my iMac (OSX ver 10.6.8). I think ImageMagick is
successfully installed in its
Hi all!
I'va tried to install the routine FEAR in R, to compute DEA estimates for
an academic work.
I've downloaded and installed R (the last version 2.14.1) from
http://lib.stat.cmu.edu/R/CRAN, and then I've downloaded FEAR, I've saved
it on the desktop, and following the instruction I've
Hi Josh,
Thanks for your response !
Actually, I already tried to plot it with a classical regression and I
know the relation is linear:
dA = 0.765 * dCOM - 0.089
p(slope) 0.0001
p(intercept) = 0.0003
The fact is that I can not use these results as my variables dA and dCOM are
correlated
That works greatly. Thanks a lot!
On Sat, Jan 21, 2012 at 8:59 PM, R. Michael Weylandt
michael.weyla...@gmail.com wrote:
Read the help page for loadparticularly the part about environments.
E.g.,
a - 3
save(a, file = temp.RData)
a - 4
env - new.env()
load(temp.RData, env)
On 23.01.2012 15:12, Gilda Mazzarelli wrote:
Hi all!
I'va tried to install the routine FEAR in R, to compute DEA estimates for
an academic work.
I've downloaded and installed R (the last version 2.14.1) from
http://lib.stat.cmu.edu/R/CRAN, and then I've downloaded FEAR, I've saved
it on the
Looked at several posts and the installtions docs and still not clear.
If I compile source codes and then somewhere down the line add
a new package, then I have to recompile my entire installation,
correct? Seems like this is the sentiment of the emails I read.
In general, you only need to recompile changed packages if you are
staying with the same version of R (to the best of my knowledge). For
changes in R, you might need to recompile everything, depending on the
size of the change in R and your OS.
Things might be slightly different if you are
On 23.01.2012 16:13, Scott Raynaud wrote:
Looked at several posts and the installtions docs and still not clear.
If I compile source codes
Which source codes? R itself? A package? Something else? Byte-compile?
and then somewhere down the line add
a new package,
What does add mean? Add
Greetings,
Regarding NRI requires cutoff values or not, the more recent Pencina
et al's paper suggests the use of a category-free NRI, i.e. without
cutoffs.
Pencina, D'Agostino, Steyerberg. Statist Med 2011,30:11-21.
For computations, I find Hmisc's improveProb is very flexible. Allows
use for
Does adding font=2 (to select bold) work? See ?par - option font.
--
David L Carlson
Associate Professor of Anthropology
Texas AM University
College Station, TX 77843-4352
-Original Message-
From: r-help-boun...@r-project.org
Dear Duncan,
That solved it beautifully!
Manabu
On 23 January 2012 14:07, Duncan Murdoch murdoch.dun...@gmail.com wrote:
On 12-01-23 8:50 AM, Manabu Sakamoto wrote:
Dear list,
I gave up trying to fix my movie3d (rgl library) issue in my PC
(completely black gif/png file) and went ahead
Hello all,
In lme4 if you want to model two non-nested random effects you code it like
this:
mod1 - lmer(y~x + (1|randomvar1) + (1|randomvar2))
How would you go about to model something similar in nlme?
In my database I have two variables for which I have repeated measures, lets
call them
I know this isn't what you are asking, but have you considered examining the
relationship between dA and the community density excluding dA?
JulieV wrote
Hi Josh,
Thanks for your response !
Actually, I already tried to plot it with a classical regression and I
know the relation is
mwege RProgStuff at gmail.com writes:
Hello all,
In lme4 if you want to model two non-nested random effects you code it like
this:
mod1 - lmer(y~x + (1|randomvar1) + (1|randomvar2))
How would you go about to model something similar in nlme?
In my database I have two variables for
Hi, I am trying to upgrade my R version but am having some error trying to get
the key for automatic upgrading from aptitude (ubuntu 11.04). This is what I
did, following instructions from http://cran.r-project.org/bin/linux/ubuntu/
I added the repository address to my software manager.
deb
Dear R users,
I am trying to use the dlm package, and in particular the dlmBSample function.
For some reason that I am not able to understand, this function does not work
properly and the plot of the result does not make sense, while dlmFilter works
perfectly.
I think that my_mod is correct,
With all due respect, these appear to be statistics issues not R
issues. I suggest that they be taken off list and perhaps continued on
stackexchange or some other statistics forum if not privately.
-- Bert
On Mon, Jan 23, 2012 at 8:38 AM, B77S bps0...@auburn.edu wrote:
I know this isn't what
You should read the error message and fix the mentioned file's ownership (see
ls -l and man chown)
---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics:
Dear all,
Supposed I run the following command:
###
#install.packages(Rassoc, dependencies=TRUE)
library(Rassoc)
ca=c(139,249,112)
co=c(136,244,120)
a=rbind(ca,co)
MAX3(a,asy,1)
##
I get:
The MAX3 test using the asy method
?str tells you about the object.
str(MAX3(a,'asy',1))
from that you can see the names of the various parts including p.value.
foo - MAX3(a,'asy',1)$p.value
On Mon, Jan 23, 2012 at 9:32 AM, Tiago V. Pereira
tiago.pere...@mbe.bio.brwrote:
Dear all,
Supposed I run the following command:
I am running R version 2.14.1 with up-to-date packages.
When running the HoltWinters function as in
HoltWinters(logjj,gamma=FALSE,beta = TRUE) i get back
Smoothing parameters:
alpha: 0.1692882
beta : TRUE
gamma: FALSE
In the old days (several weeks ago) i used to get back the actual
Hello!
I'm working with a matrix called 'subER'. This matrix has 150(=h) rows and
15 columns. What I would like to do is have a command that will identify the
minimum 4 values in each row and return the column numbers where these
values were found. My hope is to store this information in a new
I'd do something like
apply(subER, 1, function(x) which(x %in% sort(x)[1:4]))
E.g.
subER - matrix(sample(100), 10)
But I'll admit that seems clunkier than it should be.
On Mon, Jan 23, 2012 at 12:41 PM, connollj conno...@uoguelph.ca wrote:
Hello!
I'm working with a matrix called 'subER'.
I would like to thank Justin and Matthias for their very helpful on my
query (see it below).
All the best,
Tiago
Dear all,
Supposed I run the following command:
###
#install.packages(Rassoc, dependencies=TRUE)
library(Rassoc)
ca=c(139,249,112)
co=c(136,244,120)
On Jan 23, 2012, at 15:38 , Uwe Ligges wrote:
On 23.01.2012 15:12, Gilda Mazzarelli wrote:
Hi all!
I'va tried to install the routine FEAR in R, to compute DEA estimates for
an academic work.
I've downloaded and installed R (the last version 2.14.1) from
http://lib.stat.cmu.edu/R/CRAN,
Uwe Ligges ligges at statistik.tu-dortmund.de writes:
On 23.01.2012 15:12, Gilda Mazzarelli wrote:
Hi all!
I'va tried to install the routine FEAR in R, to compute DEA estimates for
an academic work.
I've downloaded and installed R (the last version 2.14.1) from
Michael,
That's perfect.
Thank you so much, I've been struggling with this for days!
Jess
--
View this message in context:
http://r.789695.n4.nabble.com/Return-the-matrix-location-of-multiple-entries-tp4321412p4321503.html
Sent from the R help mailing list archive at Nabble.com.
I am running R 2.14.1 on a Windows XP (32 bit) system, and am trying to
install the package 'Rmpi' to allow me to parallel process on all cores of a
quad-core PC (and if that works well, I want to add extra slaves from a
dual-core laptop). Rmpi appears to install OK (see below), but I am
Hi All,
I am trying to figure out what package was used to create the following
graph?
http://f.imgtmp.com/MZjwy.png
Thanks,
Debs
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting
On Mon, Jan 23, 2012 at 01:08:03PM -0500, R. Michael Weylandt wrote:
I'd do something like
apply(subER, 1, function(x) which(x %in% sort(x)[1:4]))
E.g.
subER - matrix(sample(100), 10)
Hi.
This is OK, if there are four smallest values, which
are different from the rest. For the first
On Jan 23, 2012, at 2:23 PM, Debs Majumdar wrote:
Hi All,
I am trying to figure out what package was used to create the
following graph?
My guess would be filled.contour in the graphics package.
http://f.imgtmp.com/MZjwy.png
--
David Winsemius, MD
West Hartford, CT
On Jan 23, 2012, at 2:30 PM, Petr Savicky wrote:
On Mon, Jan 23, 2012 at 01:08:03PM -0500, R. Michael Weylandt wrote:
I'd do something like
apply(subER, 1, function(x) which(x %in% sort(x)[1:4]))
E.g.
subER - matrix(sample(100), 10)
Hi.
This is OK, if there are four smallest values,
Season Individual FT FTLengthCurvIndex dir.lin
2009W GW522 1 20 0.538931977 1.8884631
2009W GW522 2 28 0.498651384 0.8379838
2010W A1841 17 0.492549537 1.23907
2010W A1842 23 0.630582873
Hi, all:
I met Non-conforming parameters for function %*% problem, when I run the
Jags model in R.
My model is like this:
model{
for(i in 1:n){
for(j in 1:t[i]){
et[i,j]-yt[i,j]-beta0+betax*xt[i,j]+betat*t[i,j]
}
for(a in 1:t[i]){
for(b in 1:t[i]){
...
tmp.result - MAX3(a,asy,1)
tmp.result$p.value
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal,
Did you suceed in writing the code for the empricial copula or did you find
it somewhere?
I am searching for a code right now, anyone?
Thanks
--
View this message in context:
http://r.789695.n4.nabble.com/empirical-copula-code-tp1577388p4321784.html
Sent from the R help mailing list archive at
On 1/23/2012 8:40 PM, David Winsemius wrote:
On Jan 23, 2012, at 2:30 PM, Petr Savicky wrote:
On Mon, Jan 23, 2012 at 01:08:03PM -0500, R. Michael Weylandt wrote:
I'd do something like
apply(subER, 1, function(x) which(x %in% sort(x)[1:4]))
E.g.
subER - matrix(sample(100), 10)
Hi.
This
3x4
Error: unexpected symbol in 3x4
R has no idea that you equate x as multiplication.. use an astrix
3*4
[1] 12
dominic wrote
This is basically my code:
library(MASS)
lmsreg(formula = b0 ~ b1 + b3 + b1xb2, data=mydata)
b1xb2 is an interaction but it was the centered value for
A couple of additional notes that may or may not be helpful...
1. Note that Michael's solution does exactly as requested and provided
the indices of the 4 smallest values. However it does not provide them
in the order of those values. A simpler construction that does is:
apply(subER, 1,
Thanks so much folks. These have all been very helpful!!
Thanks again,
Jess
--
View this message in context:
http://r.789695.n4.nabble.com/Return-the-matrix-location-of-multiple-entries-tp4321412p4321915.html
Sent from the R help mailing list archive at Nabble.com.
1. It's an interaction in a formula not a multiplication.
2. Read the Help file. It says to use ltsreg not lmsreg.
3. But no P values will be given anyway. The reason is that exact
distributions and therefore reliable P values or CI's for small
samples do not exist for these robust procedures
On Sun, 22 Jan 2012, Kevin Burton wrote:
I installed 'spatial' and could not see that the package includes data to
map Alaska and Hawaii along with the associated counties .I saw in the demo
for the package 'sp' that county data was read in for the state of North
Carolina but I am unclear
I wish to perform moving tiles bootstrap resampling on some gridded data
meteorological data. I've many years experience with S-Plus, but it has
no way to perform a moving-tiles bootstrap. Within R I've learned how to
use quadratresample() with the spatstats package and would be happy to
Hi, anybody can help me with this? can JAGS solve the inverse of a matrix
in the 3-way array? Thank you!
for(i in 1:n){
for(a in 1:t[i]){
for(b in 1:t[i]){
sigma[i,a,b]-pow(rho,t[a]-t[b])
}
}
sigmainverse[i,,]-inverse(sigma[i,,]) # this is where jags got error
}
I have already obtained my confidence intervals from a bootstrapping
procedure and now I want to plot the estimates and the confidence intervals
similar to the plots obtained when the geom_smooth function is used in
ggplot2.
Thanks
--
View this message in context:
Hi guys,
I'm trying to do the autocovariance of a moving average but it's giving me
errors. Here is my code:
w=rnorm(500,0,1)
v=filter(w, sides=2, rep(1/3,3))
acf(w, lag.max=20) =that printed out a nice graph.
acf(v, lag.max=20)
Error in na.fail.default(as.ts(x)) : missing values in
Dear fellow R-users
I've always used Prof Harrell's rms package to calculate/visualize partial
R2 values from a standard regression analysis (below is a quick example on
how I've done so). Recently, I calcuated partial R2 values using the ppcor
and gRbase packages. As it turns out, ppcor and
Thanks Jim, that's worked
On 24 January 2012 00:49, jholtman [via R]
ml-node+s789695n4320727...@n4.nabble.com wrote:
If 'idh' is the set of indices resulting from the 'split', then your
function would probably have to look like this:
myfun - function(x){
H.scv - Hscv(data[x, ], pilot =
the filter() command puts NAs on the ends.
acf(na.omit(v))
Michael
On Mon, Jan 23, 2012 at 7:27 PM, Rampagegrl
takaishi_blackwi...@hotmail.com wrote:
Hi guys,
I'm trying to do the autocovariance of a moving average but it's giving me
errors. Here is my code:
w=rnorm(500,0,1)
v=filter(w,
There are multiple inverse() functions in the R universe: which one
are you attempting to use? (Also, none of them seem to be in
particularly standard packages: are you sure you aren't looking for
solve()?)
Reproducible code (as well as including the error you got) would be
very helpful.
Michael
On Jan 23, 2012, at 7:37 PM, klakoh wrote:
I have already obtained my confidence intervals from a bootstrapping
procedure and now I want to plot the estimates and the confidence
intervals
similar to the plots obtained when the geom_smooth function is used in
ggplot2.
Thanks
You should
Dear All,
I have a text file, tab delimited, called sample.txt,as follows:
ID_REF382GC_ScoreThetaRB_Allele_FreqLog_R_Ratio
23BB0.91015270.97349790.878895110
26AB0.60033230.43850732.0333640.48509790.01553433
I have
It's pretty hard to answer this without the file in hand, but I'd
guess something like the following is at play:
Columns of data.frame()s have to have a single type. So if R sees
anything it thinks is a character, it will coerce the whole column to
character. Since you have not set the first row
Would you like to do this plot in base graphics or in ggplot2? If the
latter, I'd suggest you look over Hadley's online documentation and
the archives of the dedicated ggplot2 mailing list.
If you want to do it in base graphics, you'll have to say what your
data set looks like and what sort of
You could use the saveHistory command to save the history of commands that you
have written to a file, then read that into a variable using the scan function,
then do the save or save.image to save everything.
A different approach would be to save transcripts of your session that would
show
In addition to the recommendations to use the grid function, you could just do:
par(tck=1)
before calling the plotting functions.
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf Of Erin Hodgess
Sent: Wednesday, January 18, 2012 6:19
See the rasterImage function to do the plotting. If you need to read the image
in then I would start with the EBImage package from bioconductor (though there
are others as well).
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf Of
You might consider using the state.vbm map that is now part of the maptools
package.
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf Of Jeffrey Joh
Sent: Tuesday, January 17, 2012 3:37 AM
To: r-help@r-project.org
Subject: [R] Display
Ok, it seems to have worked on my machine as well, but for some levels
you didn't mention before.
If you are having trouble with the header names, I'll take a stab at
it -- R (by default) requires them to be syntactically valid names
(i.e., can't start with a number or have a dollar sign or
Is there a package (and for that matter a function) that I can use to
create clustered wordclouds. The current wordcloud package simply has more
frequent words as larger words, whereas what I want is the cluster centre
to be the more frequent words but, the closer a word is to another the
higher
Here is a relatively simple script (with comments as to the logic
interspersed):
# Some of these libraries are probably not needed here, but leaving them in
place harms nothing:
library(tseries)
library(xts)
library(quantmod)
library(fGarch)
library(fTrading)
library(ggplot2)
# Set the
79 matches
Mail list logo
