[R] is Gb gigabyte or gigabit?

2011-04-15 Thread Mike Miller
think we should refer to gigabytes instead when discussing memory usage. Mike __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] Identify period length of time series automatically?

2011-04-14 Thread Mike Marchywka
Date: Thu, 14 Apr 2011 11:29:23 +0200 From: r.m.k...@gmail.com To: r-help@r-project.org Subject: [R] Identify period length of time series automatically? -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi I have 10.000 simulations for a

Re: [R] Incremental ReadLines

2011-04-14 Thread Mike Marchywka
Date: Wed, 13 Apr 2011 10:57:58 -0700 From: frederikl...@gmail.com To: r-help@r-project.org Subject: Re: [R] Incremental ReadLines Hi there, I am having a similar problem with reading in a large text file with around 550.000 observations with

Re: [R] Identify period length of time series automatically?

2011-04-14 Thread Mike Marchywka
On 14/04/11 11:57, Mike Marchywka wrote: Date: Thu, 14 Apr 2011 11:29:23 +0200 From: r.m.k...@gmail.com To: r-help@r-project.org Subject: [R] Identify period length of time series automatically? -BEGIN PGP SIGNED MESSAGE

[R] integer and floating-point storage

2011-04-14 Thread Mike Miller
interested in working on developing some of these features in R? We have GPL code from PLINK and Octave that might help a lot. http://www.gnu.org/software/octave/doc/interpreter/Integer-Data-Types.html Best, Mike -- Michael B. Miller, Ph.D. Bioinformatics Specialist Minnesota Center for Twin

Re: [R] Incremental ReadLines

2011-04-14 Thread Mike Marchywka
Date: Thu, 14 Apr 2011 11:57:40 -0400 Subject: Re: [R] Incremental ReadLines From: frederikl...@gmail.com To: marchy...@hotmail.com CC: r-help@r-project.org Hi Mike, Thanks for your comment. I must admit that I am very new to R and although

[R] Compatibility with Work Load/Resource Managers

2011-04-12 Thread Mike Michie
Hi, I was wondering if anyone knew whether R is capable of integrating with the following work load/resource managers TORQUE, OpenPBS, PBS Pro, LSF, and SGE? Thanks, Mike [[alternative HTML version deleted]] __ R-help@r-project.org

Re: [R] Converting edgelist to symmetric matrix/ plotting sparse network with lots of nodes

2011-04-11 Thread Mike Marchywka
Date: Sat, 9 Apr 2011 14:34:28 -0700 From: kmshafi...@yahoo.com To: r-help@r-project.org Subject: [R] Converting edgelist to symmetric matrix Hi, I have network data in the form of a couple of edgelists containing weights in the format x,y,weight whereby x represents row header and y

Re: [R] Meta-analysis of a correlation matrix

2011-04-11 Thread Mike Cheung
(). Regards, Mike -- -  Mike W.L. Cheung               Phone: (65) 6516-3702  Department of Psychology       Fax:   (65) 6773-1843  National University of Singapore  http://courses.nus.edu.sg/course/psycwlm/internet

Re: [R] Converting edgelist to symmetric matrix

2011-04-10 Thread Mike Marchywka
Date: Sat, 9 Apr 2011 14:34:28 -0700 From: kmshafi...@yahoo.com To: r-help@r-project.org Subject: [R] Converting edgelist to symmetric matrix Hi, I have network data in the form of a couple of edgelists containing weights in the format

Re: [R] Scrap java scripts and styles from an html document

2011-04-07 Thread Mike Marchywka
Date: Thu, 7 Apr 2011 04:15:50 -0700 From: antuj...@gmail.com To: r-help@r-project.org Subject: Re: [R] Scrap java scripts and styles from an html document Hi , I am working on developing a web crawler. Comments like this come up on the

Re: [R] system() command in R

2011-04-05 Thread Mike Marchywka
Date: Tue, 5 Apr 2011 13:37:12 +0530 From: nandan.a...@gmail.com To: rasanpreet.k...@gmail.com CC: r-help@r-project.org Subject: Re: [R] system() command in R On 4 April 2011 16:54, rasanpreet kaur suri wrote: Hi all, I have a local

Re: [R] Time series example in Koop

2011-04-05 Thread Mike Marchywka
Date: Tue, 5 Apr 2011 07:35:04 -0500 From: ravi.k...@gmail.com To: r-help@r-project.org Subject: [R] Time series example in Koop I am trying to reproduce the output of a time series example in Koop's book Analysis of Financial Data. Koop does the example in Excel and I used the ts

Re: [R] help

2011-04-03 Thread Mike Marchywka
Date: Sun, 3 Apr 2011 01:35:16 +0530 From: nandan.a...@gmail.com To: padmanabhan.vija...@gmail.com CC: r-help@r-project.org Subject: Re: [R] help One way that u might have thought of is to create plot in PDF in R and the use pdftools. Additionally one can also think of running R script

Re: [R] Asking Favor For the Script of Median Filter

2011-03-27 Thread Mike Marchywka
( sorry if this is a duplicate, I am not sure if hotmail is dropping some of my posts. Thanks ) You obviously want to delegate inner loops to R packages that execute as native, hopefully optimized, code. Generally a google search that starts with R CRAN will help. In this case it looks

Re: [R] Asking Favor For the Script of Median Filter

2011-03-27 Thread Mike Marchywka
, Mike Marchywka wrote: You obviously want to delegate inner loops to R packages that execute as native, hopefully optimized, code. Generally a google search that starts with R CRAN will help. In this case it looks like a few packages available, http://www.google.com/search?sclient=psyhl=enq

Re: [R] Popularity of R, SAS, SPSS, Stata, Statistica, S-PLUS updated

2011-03-25 Thread Mike Marchywka
Date: Fri, 25 Mar 2011 09:40:39 + From: all...@cybaea.com To: muenchen@gmail.com CC: frien...@yorku.ca; had...@rice.edu; r-h...@stat.math.ethz.ch Subject: Re: [R] Popularity of R, SAS, SPSS, Stata, Statistica, S-PLUS updated Not R,

Re: [R] Problem with Snowball RWeka

2011-03-24 Thread Mike Marchywka
Date: Thu, 24 Mar 2011 03:35:31 -0700 From: kont...@alexanderbachmann.de To: r-help@r-project.org Subject: [R] Problem with Snowball RWeka Dear Forum, when I try to use SnowballStemmer() I get the following error message: Could not initialize

Re: [R] Rapache ( was Developing a web crawler )

2011-03-22 Thread Mike Marchywka
Subject: Re: [R] Rapache ( was Developing a web crawler ) From: m...@biostatmatt.com To: marchy...@hotmail.com CC: r-help@r-project.org Date: Sun, 6 Mar 2011 13:51:53 -0500 On Sun, 2011-03-06 at 08:06 -0500, Mike Marchywka wrote

Re: [R] lm ~ v1 + log(v1) + ... improve adj Rsq ¿any sense?

2011-03-22 Thread Mike Marchywka
Date: Tue, 22 Mar 2011 09:31:01 -0700 From: crossp...@hotmail.com To: r-help@r-project.org Subject: [R] lm ~ v1 + log(v1) + ... improve adj Rsq ¿any sense? Dear all, I want to improve my adj - R sq. I 've chequed some established models and

Re: [R] How to draw a map of Europe?

2011-03-19 Thread Mike Marchywka
Date: Sat, 19 Mar 2011 19:32:43 -0500 From: shali...@gmail.com To: r-help@r-project.org Subject: [R] How to draw a map of Europe? Hi R users, I need to draw a map of select European countries with country names shown on the map. Does anyone

Re: [R] How to make sure R's g++ compiler uses certain C++ flags when making a package

2011-03-17 Thread Mike Marchywka
Date: Wed, 16 Mar 2011 13:50:37 -0700 From: solomon.mess...@gmail.com To: r-help@r-project.org Subject: Re: [R] How to make sure R's g++ compiler uses certain C++ flags when making a package Looks like the problem may be that R is automatically

Re: [R] Incorrect degrees of freedom in SEM model using lavaan

2011-03-17 Thread Mike Cheung
. If you want to mirror the behaviors in other SEM packages, you may try: fit2 - sem(model, sample.nobs=161, sample.cov=myCov, fixed.x=FALSE) inspect(fit2, what=free) summary(fit2) Hope it helps. Mike -- -  Mike W.L. Cheung

Re: [R] Spatial cluster analysis of continous outcome variable

2011-03-17 Thread Mike Marchywka
Did you post your data or hypothetical data? Usually that helps make your problem more clear and more interesting ( likely to get a useful response to your post). From: tintin...@hotmail.com To: r-help@r-project.org Date: Thu, 17 Mar 2011 17:38:14

Re: [R] minimum distance between line segments

2011-03-10 Thread Mike Marchywka
Date: Wed, 9 Mar 2011 10:55:46 +1300 From: darcy.web...@gmail.com To: r-help@r-project.org Subject: [R] minimum distance between line segments Dear R helpers, I think that this may be a bit of a math question as the more I consider it,

[R] plot question, increasing Y-axis labels

2011-03-10 Thread Mike Gibson
plot but a y-axis label at every integer (i.e. labels at 5,6,7,8,9,10,...25). I have been unable to figure this out. Any adice would be greatly appreciated. Mike [[alternative HTML version deleted

[R] SQLDF - Submitting Queries with R Objects as Columns

2011-03-09 Thread Mike Schumacher
. This is necessary because my SQLDF is part of a larger function that I call that repeatedly with different column names. Code below... thank you in advance! Mike library(sqldf) testdf-data.frame(c(1,2,3,4,5,6,7,8,9,10),c(1,1,1,2,2,2,3,3,3,3)) names(testdf)-c(X,Y) # Works as intended sqldf(select sum(X

Re: [R] minimum distance between line segments

2011-03-09 Thread Mike Marchywka
To: r-h...@stat.math.ethz.ch From: hwborch...@googlemail.com Date: Wed, 9 Mar 2011 17:45:53 + Subject: Re: [R] minimum distance between line segments Darcy Webber gmail.com writes: Dear R helpers, I think that this may be a bit of a

Re: [R] null model for a single species?

2011-03-07 Thread Mike Marchywka
Date: Mon, 7 Mar 2011 14:15:49 +0100 From: johannes.pen...@mfn-berlin.de To: r-help@r-project.org Subject: [R] null model for a single species? Dear List members, I would like to test whether an observed occupancy of lakes in a landscape

Re: [R] Coefficient of Determination for nonlinear function

2011-03-06 Thread Mike Marchywka
From: uwe.wolf...@uni-ulm.de To: andy_l...@merck.com Date: Sat, 5 Mar 2011 17:14:12 +0100 CC: r-help@r-project.org; gunter.ber...@gene.com Subject: Re: [R] Coefficient of Determination for nonlinear function Dear Bert, dear Andy, thanks for

Re: [R] Rapache ( was Developing a web crawler )

2011-03-06 Thread Mike Marchywka
Date: Thu, 3 Mar 2011 13:04:11 -0600 From: matt.shotw...@vanderbilt.edu To: r-help@r-project.org Subject: Re: [R] Developing a web crawler / R webkit or something similar? [off topic] On 03/03/2011 08:07 AM, Mike Marchywka wrote

Re: [R] Monte carlo help

2011-03-06 Thread Mike Marchywka
Date: Sun, 6 Mar 2011 15:42:11 -0800 From: ksa...@gmail.com To: r-help@r-project.org Subject: [R] Monte carlo help Hello, I am currently doing my project and I need some help. I am trying to schedule tutors for a study room where students

Re: [R] How two compare two matrixes

2011-03-04 Thread Mike Marchywka
?image ?matrix z-matrix(rnorm(100),nrow=10) image(1:10,1:10,z) heatmap(z) Date: Fri, 4 Mar 2011 09:04:41 +0100 From: p.pa...@wzw.tum.de To: r-help@r-project.org Subject: Re: [R] How two compare two matrixes Dear all I have two 10*10

[R] Lepage Test

2011-03-04 Thread mike
Hey everyone, I am interest in running a Lepage multi sample test and i would like to ask if there is any code availabe for that. Thank you in advance -- View this message in context: http://r.789695.n4.nabble.com/Lepage-Test-tp3335861p3335861.html Sent from the R help mailing list archive at

Re: [R] Lepage Test

2011-03-04 Thread mike
Subject: Re: Lepage Test Hi Mike, RSiteSearch(Lepage) looks promising. Best, Ista On Fri, Mar 4, 2011 at 8:00 PM, mike [hidden email]https://exchange.uky.edu/owa/UrlBlockedError.aspx wrote: Hey everyone, I am interest in running a Lepage multi sample test and i would like to ask

Re: [R] Developing a web crawler / R webkit or something similar?

2011-03-03 Thread Mike Marchywka
Date: Thu, 3 Mar 2011 01:22:44 -0800 From: antuj...@gmail.com To: r-help@r-project.org Subject: [R] Developing a web crawler Hi, I wish to develop a web crawler in R. I have been using the functionalities available under the RCurl package. I am able to extract the html content of

Re: [R] R and Android

2011-03-02 Thread Mike Marchywka
Date: Wed, 2 Mar 2011 11:44:41 + From: ali.zolfagh...@gmail.com To: r-help@r-project.org Subject: [R] R and Android Hi List, Is anybody aware of any R console available for Android mobile? I know that there is one for Iphone. I was just

Re: [R] Is there any Command showing correlation of all variables in a dataset?

2011-03-01 Thread Mike Marchywka
Date: Tue, 1 Mar 2011 02:41:00 -0800 From: joo...@hanmail.net To: r-help@r-project.org Subject: [R] Is there any Command showing correlation of all variables in a dataset? Thanks in advance. I want to derive correlations of variables

Re: [R] Simulation

2011-03-01 Thread Mike Marchywka
Date: Mon, 28 Feb 2011 19:18:18 -0800 From: kadodamb...@hotmail.com To: r-help@r-project.org Subject: [R] Simulation I tried looking for help but I couldn't locate the exact solution. I have data that has several variables. I want to do several

Re: [R] Hello!

2011-02-28 Thread Mike Marchywka
Date: Sun, 27 Feb 2011 14:31:57 -0800 [[elided Hotmail spam]] From: jwiley.ps...@gmail.com To: marchy...@hotmail.com CC: r-help@r-project.org On Sun, Feb 27, 2011 at 9:16 AM, Mike Marchywka wrote: I can probably find more negative ones

Re: [R] re-arranging data to create an image (or heatmap)

2011-02-28 Thread Mike Marchywka
ok, third try. This is a repost of a message never made it past mod as I cancelled while it was waiting to clean up some code to at least make it close to working. I think this does more or less what you want, library(VecStatGraphs2D) DrawDensityMap(x1,x2,PaintPoint=TRUE) but if not see

Re: [R] Hello!

2011-02-27 Thread Mike Marchywka
Date: Sun, 27 Feb 2011 08:27:00 -0800 From: markkne...@gmail.com To: gunter.ber...@gene.com CC: r-help@r-project.org Subject: Re: [R] Hello! On Sat, Feb 26, 2011 at 10:11 PM, Bert Gunter wrote: Are you a fan of James Joyce? Is the Caps key on your keyboard broken? -- Bert

Re: [R] Group rows by common ID and plot?

2011-02-25 Thread Mike Marchywka
Date: Thu, 24 Feb 2011 13:28:18 -0800 From: dannyb...@gmail.com To: r-help@r-project.org Subject: Re: [R] Group rows by common ID and plot? does this do what you want?  library(lattice)

[R] e1071's Naive Bayes with Weighted Data

2011-02-25 Thread Mike Schumacher
? I've been unsuccessful in my research. Thanks, Mike library(e1071) a-c(1,1,1,1,0,0,0,0) b-c(A,B,A,B,A,B,A,B) c-c(X,X,Y,Y,X,X,Y,Y) d-c(4,3,2,1,20,15,11,4) input-data.frame(a,b,c,d) ## NAIVE BAYES - NO WEIGHT ## model - naiveBayes(a ~ factor(b)+factor(c), data = input) ## NAIVE BAYES - WEIGHT

[R] Weighted Mean By Factor Using BY

2011-02-23 Thread Mike Schumacher
Hello R folks, Reproducible code below - I'm trying to do a weighted mean by a factor and can't figure it out. Thanks in advance for your assistance. Mike data-data.frame(c(5,5,1,1,1), c(10,8,9,5,3), c(A,A,A,B,B)) names(data)-c

Re: [R] Weighted Mean By Factor Using BY

2011-02-23 Thread Mike Schumacher
I withdraw this question, I was able to accomplish this by creating a new function. Now if only I could get the by output into a dataframe... Mike On Wed, Feb 23, 2011 at 2:25 PM, Mike Schumacher mike.schumac...@gmail.comwrote: Hello R folks, Reproducible code below - I'm trying to do

Re: [R] problem installing R in Ubuntu 10.04 -HELP

2011-02-22 Thread Mike Marchywka
Date: Tue, 22 Feb 2011 11:12:26 +0100 From: r.m.k...@gmail.com To: graham.willi...@togaware.com CC: r-help@r-project.org Subject: Re: [R] problem installing R in Ubuntu 10.04 -HELP -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 02/22/2011

Re: [R] problem installing R in Ubuntu 10.04 -HELP

2011-02-22 Thread Mike Marchywka
- Hash: SHA1 On 02/22/2011 02:33 PM, Mike Marchywka wrote: Date: Tue, 22 Feb 2011 11:12:26 +0100 From: r.m.k...@gmail.com To: graham.willi...@togaware.com CC: r-help@r-project.org Subject: Re: [R] problem installing R in Ubuntu 10.04

Re: [R] Generating uniformly distributed correlated data.

2011-02-21 Thread Mike Marchywka
Date: Mon, 21 Feb 2011 13:03:53 +0100 From: erich.neuwi...@univie.ac.at To: soren.fau...@biology.au.dk; r-help@r-project.org Subject: Re: [R] Generating uniformly distributed correlated data. hw-function(r){ (3-sqrt(1+8*r))/4 }

Re: [R] Regarding Soft Independent Modeling Computational Analysis

2011-02-21 Thread Mike Marchywka
Date: Mon, 21 Feb 2011 10:45:17 +0530 From: reynoldspravin...@gmail.com To: r-help@r-project.org Subject: [R] Regarding Soft Independent Modeling Computational Analysis Hi I'm a B.E student pursuing my Project in the CEERI unit of the Council of

Re: [R] Generating uniformly distributed correlated data.

2011-02-21 Thread Mike Marchywka
Date: Mon, 21 Feb 2011 15:53:26 +0100 From: erich.neuwi...@univie.ac.at To: marchy...@hotmail.com CC: soren.fau...@biology.au.dk; r-help@r-project.org Subject: Re: [R] Generating uniformly distributed correlated data. We want to generate a

Re: [R] Seeking help in Package development

2011-02-20 Thread Mike Marchywka
Date: Sun, 20 Feb 2011 15:56:41 +0100 From: lig...@statistik.tu-dortmund.de To: jwiley.ps...@gmail.com CC: r-help@r-project.org Subject: Re: [R] Seeking help in Package development May I add that the best documentation for building

Re: [R] lm without intercept

2011-02-18 Thread Mike Marchywka
Date: Fri, 18 Feb 2011 12:25:36 +0100 From: achim.zeil...@uibk.ac.at To: jrheinlaen...@gmx.de CC: r-help@r-project.org Subject: Re: [R] lm without intercept On Fri, 18 Feb 2011, Jan wrote: Hi, I am not a statistics expert, so I have this

Re: [R] Boundaries of R

2011-02-18 Thread Mike Marchywka
Date: Fri, 18 Feb 2011 08:39:05 -0500 From: murdoch.dun...@gmail.com To: mich...@aers.ca CC: r-help@r-project.org Subject: Re: [R] Boundaries of R On 18/02/2011 5:44 AM, Michael Holt wrote: Hello Everyone, I'm pretty new to R and

[R] calculating means

2011-02-18 Thread Mike Gibson
to get stats to work? Mike [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-15 Thread Mike Marchywka
Date: Tue, 15 Feb 2011 00:53:46 +0100 Subject: Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling From: turchet.l...@gmail.com To: marchy...@hotmail.com CC: r-help@r-project.org Hi Mike and all, thanks again. Actually your

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-15 Thread Mike Marchywka
Dennis and Mike, thanks for the links, but of course I already knew them. So far I understood that likely the MDS is not the right analysis, since my table does not contain distances. Indeed if you have a look to the diagonal of my table you can see that the values are not 0 (which should

Re: [R] Error : singular gradient matrix at initial parameters estimates

2011-02-15 Thread Mike Marchywka
Date: Tue, 15 Feb 2011 09:43:25 +0100 From: mariedidi...@gmail.com To: r-help@r-project.org Subject: [R] Error : singular gradient matrix at initial parameters estimates Dear all, I am a fresh user of R and I already face to problems that

Re: [R] string parsing

2011-02-15 Thread Mike Marchywka
To: r-h...@stat.math.ethz.ch From: s...@gnu.org Date: Tue, 15 Feb 2011 17:20:11 -0500 Subject: [R] string parsing I am trying to get stock metadata from Yahoo finance (or maybe there is a better source?) search this for yahoo,

Re: [R] rjava does not install

2011-02-14 Thread Mike Marchywka
[ stupid hotmail still not mark original, top post. I can't figure out when it is kind enough to do this and not, probably thinks I need to use html LOL ] The point seems to be that you need jni.h which apparently is only in the jdk, not the jre. If you install java it isn't clear what this

Re: [R] how to improve the precison of this calculation?

2011-02-14 Thread Mike Marchywka
[ anyone know how to get hotmail to consistently mark original text? Now its hanging my keyboard in firefox  LOL ] Anyway, I think I was the one advocating these approaches over things like indefinite length calculations and I punted the R questions to others but I'm not real sure what you

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-14 Thread Mike Marchywka
My first goal in the analysis process is to print a perceptual map where to place the pairs of audio-visual stimuli (e.g. WD-WD, MT-DL, etc.) and see how far the trials are from each other. I've been using heatmap for stuff like this. You can get a nice picture this way and get quick

Re: [R] how to order POSIXt objects ?

2011-02-14 Thread Mike Marchywka
Date: Mon, 14 Feb 2011 00:55:12 -0800 From: jon_d_co...@yahoo.co.uk To: r-help@r-project.org Subject: [R] how to order POSIXt objects ? I have a problem ordering by descending magnitude a POSIXt object. Can someone help please and let me know

Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling

2011-02-14 Thread Mike Marchywka
Date: Mon, 14 Feb 2011 17:55:50 +0100 Subject: Re: [R] Analyzing dissimilarity ratings with Multidimensional Scaling From: turchet.l...@gmail.com To: marchy...@hotmail.com CC: r-help@r-project.org Dear Mike, thanks a lot for your answer

Re: [R] Test for equivalence

2011-02-13 Thread Mike Marchywka
From: greg.s...@imail.org To: ment...@gmx.net; r-help@r-project.org Date: Sat, 12 Feb 2011 18:04:34 -0700 Subject: Re: [R] Test for equivalence Does it make sense for you to combine the 2 data sets and do a 2-way anova with treatment vs. control as one factor and experiment number as the

Re: [R] Help optimizing EMD::extrema()

2011-02-13 Thread Mike Lawrence
on examining the start or end in great detail, so I think the uncorrected version is fine for my application. Thanks again! Mike On Sun, Feb 13, 2011 at 6:57 PM, William Dunlap wdun...@tibco.com wrote: I did not try to emulate the ndata nad ndatam1 arguments to extrema(), as I didn't see what

Re: [R] When is *interactive* data visualization useful to use?

2011-02-11 Thread Mike Marchywka
From: tal.gal...@gmail.com Date: Fri, 11 Feb 2011 08:26:16 +0200 To: r-help@r-project.org Subject: [R] When is *interactive* data visualization useful to use? Hello all, Before getting to my question, I would like to apologize for asking this

[R] Help optimizing EMD::extrema()

2011-02-11 Thread Mike Lawrence
Hi folks, I'm attempting to use the EMD package to analyze some neuroimaging data (timeseries with 64 channels sampled across 1 million time points within each of 20 people). I found that processing a single channel of data using EMD::emd() took about 8 hours. Exploration using Rprof() suggested

[R] [R-pkgs] ez version 3.0

2011-02-11 Thread Mike Lawrence
/should subscribe to keep up to date on development news. Additionally, I created a project page on github (https://github.com/mike-lawrence/ez/issues) where users can submit bug reports and feature requests. Finally, I encourage users to rate or review ez (and any other packages you use

Re: [R] Installing R on cygwin

2011-02-10 Thread Mike Marchywka
I'm not sure I did anything special to install R for use with cygwin. Availability of RCurl appears to relate to windohs AFAICT from the CRAN page. I have never bothered to use this since I already use the related linux tools available through cygwin. Building from source may have become an

Re: [R] comparing proportions

2011-02-10 Thread Mike Marchywka
I had a longer draft before but I'll just ask if you ever looked at your data? cr=rainbow(3); plot(df$success+df$failure,df$prop.success,col=cr[as.numeric(df$group)],cex=as.numeric(df$group)) you'd have to suspect that p is a function of the number of trials per subject and that differences

Re: [R] Extracting content from web

2011-02-09 Thread Mike Marchywka
[ hotmail not marking orig text, top post for clarity] This is one of my current jihads, along with removing adjectives where numbers are available, and I'm curious if there is a FAQ on this somewhere? Scraping data from web pages is always a hack, any approach should include an attempt to fix

Re: [R] precision of gamma function

2011-02-09 Thread Mike Marchywka
Date: Wed, 9 Feb 2011 18:23:21 +0100 From: savi...@praha1.ff.cuni.cz To: r-help@r-project.org Subject: Re: [R] precision of gamma function On Wed, Feb 09, 2011 at 05:23:27PM +0200, Chuse chuse wrote: Dear R users, I have to calculate gamma

Re: [R] heatmap-how to change the order of the rows (genes)

2011-02-09 Thread Mike Marchywka
Date: Wed, 9 Feb 2011 12:18:57 -0500 From: yanliu...@gmail.com To: r-help@r-project.org Subject: [R] heatmap-how to change the order of the rows (genes) Hi, I have a question about the heatmap dendrogram in R. I loaded my data matrix in command

[R] manipulating the Date Time classes

2011-02-08 Thread Mike Williamson
. Thanks Regards, Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma Narrows bridge collapse explained with abstract phase-space maps, Some x-ray slides, a music score, Minard's Napoleanic war

Re: [R] manipulating the Date Time classes

2011-02-08 Thread Mike Williamson
, unless I touch the dreaded for loop. Or unless there is a secret I do not know... Thanks! Mike Telescopes and bathyscaphes and sonar probes of Scottish lakes, Tacoma

Re: [R] Recuperate Spectrum() amplitude

2011-02-08 Thread Mike Marchywka
Date: Tue, 8 Feb 2011 17:34:15 + From: marie.guil...@bordeaux.inra.fr To: r-help@r-project.org Subject: [R] Recuperate Spectrum() amplitude Dear list, I put the code I use here to understand if the difference comes from the way

Re: [R] waveThresh plot axis

2011-02-07 Thread Mike Marchywka
Date: Mon, 7 Feb 2011 10:49:54 +0100 From: eva.a...@gmail.com To: r-help@r-project.org Subject: [R] waveThresh plot axis Dear, I am using WaveTresh for Haar Wavelets. It works all fine exept when I want to adjust the axis on the wavelet

Re: [R] aggregate function - na.action/ performance issues re structs and algorithms

2011-02-07 Thread Mike Marchywka
From: had...@rice.edu Date: Mon, 7 Feb 2011 11:00:59 -0600 To: mdo...@mdowle.plus.com CC: r-h...@stat.math.ethz.ch Subject: Re: [R] aggregate function - na.action Does FAQ 1.8 answer that ok ? Ok, I'm starting to see what data.table is

[R] Naive Bayes Issue - Can't Predict - Error is Error in log(sapply(attribs...)

2011-02-07 Thread Mike Schumacher
Hey guys, I can't get my Naive Bayes model to predict. Forgive me if its simple... I've tried about everything and can't get it to work. Reproduceable code below. Thank you, Mike -- Michael Schumacher Manager Data Analytics - ValueClick mike.schumac...@gmail.com * Functional Example Code

Re: [R] Quadratic regression: estimating the maximizing value

2011-02-05 Thread Mike Marchywka
From: greg.s...@imail.org To: ghe...@blm.gov; r-help@r-project.org Date: Fri, 4 Feb 2011 17:49:51 -0700 Subject: Re: [R] Quadratic regression: estimating the maximizing value No, your approach is not correct. For one you have not taken the

Re: [R] spline interpolation

2011-02-05 Thread Mike Marchywka
From: dwinsem...@comcast.net To: asanram...@yahoo.com Date: Sat, 5 Feb 2011 10:24:04 -0500 CC: r-help@r-project.org Subject: Re: [R] spline interpolation On Feb 5, 2011, at 9:29 AM, Asan Ramzan wrote: Hello R-help I have the following data for a standard curve

Re: [R] spline interpolation

2011-02-05 Thread Mike Marchywka
Date: Sat, 5 Feb 2011 18:08:43 +0100 From: cbelei...@units.it To: r-help@r-project.org Subject: Re: [R] spline interpolation Hi, Just pure curiosity: may I ask why you want to do spline interplation on fluorescence intensity as function

Re: [R] always about positive definite matrix

2011-02-04 Thread Mike Miller
-world applications. Best, Mike On Fri, 4 Feb 2011, Spencer Graves wrote: 1. Martin Maechler's comments should be taken as replacements for anything I wrote where appropriate. Any apparent conflict is a result of his superior knowledge. 2. 'eigen' returns the eigenvalue

Re: [R] always about positive definite matrix

2011-02-04 Thread Mike Miller
and explanations there along with a lot of information about how non-positive definite matrices may arise in real-world applications. Best, Mike On Fri, 4 Feb 2011, Spencer Graves wrote: 1. Martin Maechler's comments should be taken as replacements for anything I wrote where

[R] R Data Manipulation - Transposing Data by a Given Column, Like User_ID

2011-02-03 Thread Mike Schumacher
. :-) Thank you in advance, Mike ## INPUT DATA USER_ID-c(1,1,1,2,2,2,3,3,4) SITE -c(SITE1,SITE2,SITE3,SITE1,SITE2,SITE3,SITE1,SITE2,SITE3) COUNTS -c(10,13,22,10,12,12,13,44,99) RAW-data.frame(USER_ID,SITE,COUNTS) RAW #ANSWER SHOULD LOOK LIKE a-c(1,2,3,4) b-c(10,10,13,0) c-c(13,12,44,0) d-c(22,12,0,99

[R] general question on approaches to getting data from data providers

2011-02-01 Thread Mike Marchywka
My question, buried in this rant, is is there a mail list or other means for identifying sites with information likely to be important to many R users but the data is difficult to obtain due to the site's choice of technology? Quite often, people here ask questions about scraping html to get

Re: [R] Positive Definite Matrix

2011-02-01 Thread Mike Marchywka
Date: Tue, 1 Feb 2011 15:41:01 + From: alex.sm...@gmail.com To: spencer.gra...@structuremonitoring.com CC: r-help@r-project.org; maech...@stat.math.ethz.ch Subject: Re: [R] Positive Definite Matrix Hello thank you for so much input. I am afraid that I am fairly new to this and some of

Re: [R] p value for joint probability

2011-02-01 Thread Mike Marchywka
Date: Tue, 1 Feb 2011 12:10:31 -0800 From: nord...@dshs.wa.gov To: r-help@r-project.org Subject: Re: [R] p value for joint probability -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- project.org] On Behalf Of moleps Sent: Tuesday,

[R] computing var-covar matrix with much missing data

2011-01-31 Thread Mike Miller
. If the correlation matrix is positive definite, then the covariance matrix will be. Maybe I'll be lucky, but I need a positive-definite matrix, and this method is not guaranteed to produce one. Any ideas? Mike __ R-help@r-project.org mailing

Re: [R] Positive Definite Matrix

2011-01-30 Thread Mike Miller
are non-negative definite: They may be singular (having at least one zero eigenvalue), but they cannot have a negative eigenvalue. Mike __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] Positive Definite Matrix

2011-01-30 Thread Mike Miller
are non-negative definite: They may be singular (having at least one zero eigenvalue), but they cannot have a negative eigenvalue. Mike __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide

Re: [R] Downloading data from internet

2011-01-25 Thread Mike Marchywka
From: ggrothendi...@gmail.com Date: Mon, 24 Jan 2011 22:43:55 -0500 To: megh700...@gmail.com CC: r-help@r-project.org Subject: Re: [R] Downloading data from internet On Mon, Jan 24, 2011 at 8:48 PM, Megh Dal wrote: Dear all, I need to download an excel file from net, on which I

[R] determining the order in which points are plotted

2011-01-24 Thread Mike Miller
, so that the first group is most likely to be buried under later groups. I try to sort factor levels so that the biggest groups go first, and that helps a little, but it isn't the complete solution I'm looking for. Thanks in advance. Mike -- Michael B. Miller, Ph.D. Minnesota Center for Twin

Re: [R] determining the order in which points are plotted

2011-01-24 Thread Mike Miller
On Mon, 24 Jan 2011, David Winsemius wrote: On Jan 24, 2011, at 6:49 PM, Mike Miller wrote: I make plenty of scatterplots, especially using scatterplot.matrix from library(car). One thing I don't know how to do is determine which points are plotted last. Sometimes I plot a large number

Re: [R] determining the order in which points are plotted

2011-01-24 Thread Mike Miller
, then the entire second group, and so on. It might be possible for me to alter this code to make something that will work for me. Thanks to all for the help with this. (It's surprising how helpful a single word preceded by a question mark can be.) Mike __ R

Re: [R] which operating system + computer specifications lead to the best performance for R?

2011-01-23 Thread Mike Marchywka
Date: Sat, 22 Jan 2011 19:49:43 -0800 From: santosh.srini...@gmail.com To: r-help@r-project.org Subject: Re: [R] which operating system + computer specifications lead to the best performance for R? Hi Josh, I was referring to the below point that I read a while back when I installed my

Re: [R] question about result of loglinear analysis

2011-01-19 Thread Mike Marchywka
Date: Wed, 19 Jan 2011 01:20:06 -0800 From: djmu...@gmail.com To: laomen...@gmail.com CC: r-help@r-project.org Subject: Re: [R] question about result of loglinear analysis Hi: Well, you fit a saturated model. How many degrees of freedom do you have left for error? The fact that the

[R] dotplot line types and strip question

2011-01-18 Thread Byerly, Mike M (DFG)
)] Thanks in advance, Mike [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] Counting dates in arbitrary ranges

2011-01-18 Thread Mike Marchywka
From: simonjk...@yahoo.ca Date: Tue, 18 Jan 2011 02:16:37 -0500 To: r-help@r-project.org Subject: [R] Counting dates in arbitrary ranges Dear Colleagues, I have a data set that looks as below. I'd like to count the number of dates in a series

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