solution
to the test all combinations scheme.
Cheers,
Mike
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.
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and tests are really
only possible for repeated measures with 3 or more levels.
I think it's analogous to how you don't need to test homogeneity of
variance when performing a paired t-test; the test ends up
representing the pairs as single distribution of difference scores
with a single variance.
Mike
couldn't find anything in the contributed packages that
seemed to suit this purpose. Any pointers would be greatly
appreciated!
Cheers,
Mike
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Dalhousie University
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Thanks a lot Erik and Tony!
Both of your suggestions accomplish what I need.
Cheers,
Mike
Erik Iverson wrote:
Try
matrix(rbinom(100, 1, prob = 0.048), nrow = 10)
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
On Behalf Of bikemike42
Erik and Steve,
Thanks again for your help, both solutions do exactly what I need.
Cheers,
Mike
Steve Lianoglou wrote:
Hi,
On Nov 3, 2009, at 3:58 PM, bikemike42 wrote:
Dear All,
I am trying to fill in a blank vector (a) with one value at a time,
with
the value of the number of rows
!!
Regards, Mike
Below are the calls:
#
Below is the call which DOES work, as long as it is called by itself.
##
* eTestData -
read.table(C:/Users/userID/Documents/R/eTestDataDir
Hello -
I am just beginning to look into R Programming and have written some basic R
code. Do you know of anyone in the Boston-USA area that might be offering any
courses on R Programming? Or possibly a course online?
Many thanks
Mike Boucher
Michael Boucher | Quantitative Analyst
and col must have same length
But this will:
plot(summymodel,q=.95,col=2)
If you wanted two sets of CIs, say 95 and 99:
plot(summymodel,q=c(.95,.99),col=c(2,5))
Mike Babyak
Duke Medical Center
[[alternative HTML version deleted
cases, though we've been able to
reduce the number of SAS licenses we need.
--
Mike Prager, NOAA, Beaufort, NC
* Opinions expressed are personal and not represented otherwise.
* Any use of tradenames does not constitute a NOAA endorsement.
__
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.
You will find that R syntax (and mindset) are quite different
from SAS, so using an introductory text will save you time. I
think Peter Dalgaard's Introductory Statistics with R is quite
a good one, especially if you prefer something in the print
(rather than electronic) medium.
--
Mike Prager
the calculation, and throw a warning due to a seemingly unnecessary
'end' argument to window.
I can probably get away with using some function like sweep or scale
instead, but please let me know if I'm just misusing decompose. If it's a
bug, I hope the above helps..
Regards,
Mike
P.S.
I see
Greetings!
Can someone provide a simple script for a R function that recursively builds a
binary tree. I am most familiar with C and pass by reference, but I think R is
like Fortran and pass by value.
- Mike Beddo
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(x) - abs(x) my.tol
print(x)
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Hello,
I recently have started to learn about R, and am interested in using
it to generate data that would then get used to produce audio.
Basically, I am envisioning using R to create the data, based on
probability functions (and fractal data), which then gets output as a
text data file, and
, minimal, self-contained, reproducible code.
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Looking to arrange a meeting? Check my public calendar:
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~ Certainty is folly... I think
()
)
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mailing list
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Looking
Just curious whether anyone has any experiences to relate with regards
to using Bespin (https://bespin.mozilla.com/) as a text editor for
your R scripting.
Mike
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Department
commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tr.im/mikes_public_calendar
~ Certainty is folly... I think
do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tr.im
to missingness
summary(q)
Length Class Mode
X11_20502 1 summary.aov list
X11_21067 1 summary.aov list
X11_10419 1 summary.aov list
How can I extract all the Pr(F) values from q (not one by one)?
Thanks
Imri
Mike Lawrence wrote:
#create some data
y=rnorm(20)
x
and provide commented, minimal, self-contained, reproducible code.
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mailing list
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and provide commented, minimal, self-contained, reproducible code.
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Graduate Student
Department of Psychology
Dalhousie University
Looking
, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tr.im/mikes_public_calendar
~ Certainty is folly... I think. ~
__
R
commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tr.im/mikes_public_calendar
~ Certainty is folly... I think
.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
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~ Certainty is folly... I think. ~
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-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http
, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
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~ Certainty is folly... I think. ~
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mailing list
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Dalhousie University
Looking
: waclaw.marcin.kusnierc...@idi.ntnu.no
To: konk2...@hotmail.com
CC: mike.lawre...@dal.ca; r-help@r-project.org
Subject: Re: [R] sample variance from simulation
Mike Lawrence wrote:
why not simply
vars=list()
for (i in 1:1000) vars[[i]] = var(z[[i]])
... or, much simpler,
vars
, reproducible code.
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://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
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Dalhousie University
Looking to arrange a meeting
list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange
Uwe Ligges lig...@statistik.tu-dortmund.de wrote:
So you want some software that can do symbolic calculations? In that
case use other software. R is designed for numerical analyses.
In particular, if you are looking for good free software, you
might try Maxima.
--
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guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
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commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tr.im/mikes_public_calendar
~ Certainty is folly... I think
cells of the design.
Mike
*note: I typically use Python for data collection (showing visual
stimuli, recording responses, etc), but have it spit out raw text
files of the trial-by-trial data, and thus use it for only a bare
minimum of processing.
--
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Graduate Student
Department
Check out ggplot2:
http://had.co.nz/ggplot2/
Particularly the book:
http://had.co.nz/ggplot2/book
For error bars on bar plots specifically:
http://had.co.nz/ggplot2/geom_errorbar.html
Mike
On Wed, May 6, 2009 at 12:34 PM, steve_fried...@nps.gov wrote:
Greetings
I have encountered
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Looking to arrange a meeting? Check my public calendar:
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your command again:
mydata[,newXaxis]-as.numeric(mydata[,newXaxis])
I don't know if this will work. Just guessing.
Mike
On Fri, 1 May 2009, phoebe kong wrote:
Hi All,
I have problem about the factor features.
I read in a .cvs file, a column which is supposed to be numeric, but it
becomes
On Fri, 24 Apr 2009, Duncan Murdoch wrote:
On 4/24/2009 10:29 AM, Mike Miller wrote:
First, it looks like there is bug in the documentation...
According to the documentation for system():
http://stat.ethz.ch/R-manual/R-patched/library/base/html/system.html
input if a character vector
situations:
bar_cex - C/(n*(m+1)-1)
Where an appropriate value of C that works for one collection of
horizontal bars (n sets of m bars per set) will work for other sets of
bars.
Mike
bar_cex - (51/(n*(m+1)-1))*(.78-top_inches/11)
# generate the horizontal bar plot and store values for later
list
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Dalhousie University
Looking to arrange
(
expand=c(2,2)
)
#show the plot
print(r)
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Looking to arrange a meeting? Check my public calendar:
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R
this, so I'm hoping I can get an answer here. Thanks in advance.
Best,
Mike
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Minnesota Center for Twin and Family Research
Department of Psychology
University of Minnesota
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this, so I'm hoping I can get an answer here. Thanks in advance.
Best,
Mike
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Department of Psychology
University of Minnesota
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On Fri, 24 Apr 2009, Mike Miller wrote:
I am running bash, but system calls go to sh. I want to be able to put
that input string (0005) into a variable and do something like this:
system( i=`cat /dev/stdin` ; run_script file${i}.out ,
input=sprintf(%04d, i) )
In sh, both
On Fri, 24 Apr 2009, Mike Miller wrote:
On Fri, 24 Apr 2009, Mike Miller wrote:
I am running bash, but system calls go to sh. I want to be able to put
that input string (0005) into a variable and do something like this:
system( i=`cat /dev/stdin` ; run_script file${i}.out ,
input=sprintf
would be greatly appreciated. Thanks in advance.
Mike
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Minnesota Center for Twin and Family Research
Department of Psychology
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On Fri, 24 Apr 2009, David Winsemius wrote:
On Apr 24, 2009, at 3:14 PM, Mike Miller wrote:
I am printing numbers onto horizontal bars in a bar plots, but I am
finding it difficult to make the number always the right size. If
there are more bars, the bars get narrower and the font is too
code.
--
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Looking to arrange a meeting? Check my public calendar:
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Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public
this makes some sense (though I'd think a straight
permutation test would be a lot simpler), but having never heard of
anything like this before I thought I'd see what others on this list
think of the approach.
Mike
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://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
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Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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--
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Graduate Student
Department of Psychology
commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
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~ Certainty is folly... I think
-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Graduate Student
Department of Psychology
Dalhousie University
I'm new to LME myself, so it would be best for others to advise on this.
On Thu, Apr 16, 2009 at 3:00 PM, Jun Shen jun.shen...@gmail.com wrote:
Mike,
I kind of have the same question. What if for a mixed effect model, say
using lme(), how to specify the interaction effect (between a fixed
à 14:08 -0300, Mike Lawrence a écrit :
summary(my_lm) will give you t-values, anova(my_lm) will give you
(equivalent) F-values.
Ahem. Equivalent, my tired foot...
In simple terms (the real real story may be more intricate) :
The F values stated by anova are something entierely different
and provide commented, minimal, self-contained, reproducible code.
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oops, of course I meant:
a=c(NA,NA,2,3,NA,NA,NA)
b=1:length(a)
cbind(b=b-which.min(is.na(a)),a=a)
On Tue, Apr 14, 2009 at 9:43 AM, Mike Lawrence mike.lawre...@dal.ca wrote:
a=c(NA,NA,2,3,NA,NA,NA)
which.min(is.na(a))
[1] 3
b=1:length(a)
b-3
[1] -2 -1 0 1 2 3 4
cbind(b=b-3
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Department of Psychology
Dalhousie University
Looking to arrange
list
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Looking
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]]
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http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
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Assuming you have a data frame with columns ID CD, this should do it
Oops, the code I sent doesn't assume this. It assumes that you have
two vectors, ID CD, as generated in the first 3 lines.
On Wed, Apr 8, 2009 at 11:31 AM, Mike Lawrence mike.lawre...@dal.ca wrote:
Looks like that code
in 1:num.permutations){
IDorder = sample(index)
perm.cor[i] = .Internal(cor(ID[IDorder], CD, 4, FALSE))
}
cat('Elapsed time:',start.time-proc.time(1))
sum(perm.corobs.cor)/num.permutations
On Wed, Apr 8, 2009 at 11:33 AM, Mike Lawrence mike.lawre...@dal.ca wrote:
Assuming you have
*sigh*
and the elapsed time line should be:
cat('Elapsed time:',proc.time()[1]-start.time)
On Wed, Apr 8, 2009 at 11:35 AM, Mike Lawrence mike.lawre...@dal.ca wrote:
*Hits head*
Of course, the approach taken by your Genstat code of only shuffling
one variable is sufficient and faster
exhaustive permutation test (to
contrast with non-exhaustive permutation test).
On Wed, Apr 8, 2009 at 1:18 PM, Peter Dalgaard p.dalga...@biostat.ku.dk wrote:
Mike Lawrence wrote:
Looks like that code implements a non-exhaustive variant of the
randomization test, sometimes called a permutation
-guide.html
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Hm, it seems I possibly used the technical term nested
inappropriately in my response. I meant:
If Month is a repeated measure within each Quadrat...
and
If Treatment is also a repeated measure within each Quadrat...
On Wed, Apr 1, 2009 at 8:21 AM, Mike Lawrence mike.lawre...@dal.ca wrote
Hm, this feels reminiscent of the Wellsphere free blog content scam:
http://neurocritic.blogspot.com/2009/02/wealthcentral.html
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, it has
been shown (http://brm.psychonomic-journals.org/content/37/3/426.short)
that the R-Test is more powerful than the F-Test in the face of skewed
distributions.
My advice would thus be to abandon parametrics and simply code a
randomization test variant of the ANOVA you want.
Mike
On Tue, Mar
to
instead compute, say, the best fit weibull to each condition and
simultaneously test shift, shape, and scale.
On Tue, Mar 31, 2009 at 12:18 PM, Mike Lawrence mike.lawre...@dal.ca wrote:
Those with more formal statistical backgrounds may provide better
advice, but in my own informal training I've
(path=path_to_my_files,pattern='cust2',full.names=TRUE)
a=NULL
for(this_file in cust2_files){
a=rbind(a,read.table(this_file))
}
write.table(a,'cust2.master.txt')
On Mon, Mar 30, 2009 at 8:55 AM, Mike Lawrence mike.lawre...@dal.ca wrote:
my_files = list.files(path=path_to_my_files,pattern
commented, minimal, self-contained, reproducible code.
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~ Certainty is folly... I think
,
a - do.call(rbind, lapply(cust1_files, read.table))
(i believe expanding objects in a for loop belong to the R Inferno)
baptiste
On 30 Mar 2009, at 12:58, Mike Lawrence wrote:
cust1_files =
list.files(path=path_to_my_files,pattern='cust1',full.names=TRUE)
a=NULL
for(this_file in cust1_files
://www.R-project.org/posting-guide.html
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~ Certainty
()
,axis.title.y = theme_blank()
)
print(p1,vp = viewport(width = 1/3,height = 1,x = 1/3*.5,y = .5))
print(p2,vp = viewport(width = 1/3,height = 1,x = 1/3+1/3*.5,y = .5))
print(p3,vp = viewport(width = 1/3,height = 1,x = 2/3+1/3*.5,y = .5))
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someone here can tell me where to look. Maybe it's hidden away in here
somewhere:
http://cran.r-project.org/doc/manuals/R-data.pdf
Thanks in advance.
Mike
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PLEASE do
, not on the abscissa. Second, there
is a thick black bar on the left, but that seems to be an artifact because
at least half of it is below zero -- how can that happen?
Mike
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$convergence,'\n')
sim.gld.par = sim.fit$lambda
#assess the fit using sum squared scaled error
gld.par.sum.sq.sc.err = sum(((emp.gld.par.means$x-sim.gld.par)/sim.gld.par)^2)
print(gld.par.sum.sq.sc.err)
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Looking
-project.org/posting-guide.html
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~ Certainty is folly
wrote:
Nice work, Mike. Actually I think he was looking for it done this way.
library(ggplot2)
test_data-rnorm(100)
a=data.frame(obs=test_data,condition='None')
p1=qplot(
data=a
,x=obs
,geom='histogram'
)+coord_flip()
p2=qplot(
data=a
,y=obs
, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tinyurl.com/mikes-public-calendar
~ Certainty is folly... I think. ~
__
R-help@r-project.org
difference score. Any guesses on how to translate this into a
quantification of evidence?
Mike
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tinyurl.com/mikes-public-calendar
~ Certainty is folly... I think
Perfect, thanks!
On Wed, Mar 11, 2009 at 7:41 PM, Paul Murrell p.murr...@auckland.ac.nz wrote:
Hi
Mike Lawrence wrote:
I'm having trouble centering multi-line strip text in lattice. As the
code below demonstrates bounding box of the text is centered within
the strip, but the first line
/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tinyurl.com/mikes-public-calendar
~ Certainty is folly... I
://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tinyurl.com/mikes-public-calendar
-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http://tinyurl.com/mikes-public-calendar
~ Certainty is folly... I think
?
a=data.frame(
x=rep(1:10,2)
,y=rep(1:10,2)
,z=rep(c('First Line\nLonger Second Line (1)','First Line\nLonger
Second Line (2)'),each=10)
)
xyplot(
y~x|z
,data=a
,par.strip.text = list(cex = .75, lineheight=1, lines = 2, adj=.5),
)
--
Mike Lawrence
-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
Looking to arrange a meeting? Check my public calendar:
http
]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Mike Lawrence
Graduate
/graphiques/RGraphGallery.php?graph=90
It seems to be quite close to what you're looking for.
Mike
--
Mike Prager, NOAA, Beaufort, NC
* Opinions expressed are personal and not represented otherwise.
* Any use of tradenames does not constitute a NOAA endorsement
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