[R] Grouped Boxplot

Dear all, I need some help with plotting boxplots in groups. I have a file of the following format: - POS DISONODE_CAT -- A20Hubs C30Nonhubs B50

Re: [R] reading files

pply(as.data.frame(combn(list.files(),2),stringsAsFactors=FALSE),2, > paste,collapse="_")) > res<- data.frame(NAME,P_value,stringsAsFactors=FALSE) > row.names(res)<-1:nrow(res) > res > # NAME P_value > #1A_hubs_A_nonhubs 0.3684845 >

[R] reading files

Dear all, I need help with some coding. I have a directory with files like these: A_hubs A_nonhubs B_hubs B_nonhubs : : Each of these files have the following header and content: GENE TIS_DEG TOT_SVTIS_SVTIS_DISO ensg1 20 12 4 40 . . and so on..

[R] line plot over a barplot

Dear all, I have data in the following format : X-axisY-axis <010% 0-20 20% 20-4030% 40-6040% . and so on. I want to plot a bar graph of the above. Also I would want to add a trendline passing either through the

[R] overlapping linear plots

Hi all, Is there any way to plot multiple linear models(lm) on the same window. I have data in the following format where I would like get a log-log plot between 3rd column and 4th column and fit a straight line through the points. The problem is that I have multiple files with such a f

[R] Error while installing 'netmodels'

SUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tcltk_2.9.0 tools_2.9.0 > Detecting remotely related proteins by their Error: unexpected sy

Re: [R] Directory operations

ure out the problem ? Thanks in advance. Regards, Anupam On Sun, Jan 10, 2010 at 12:54 AM, Uwe Ligges < lig...@statistik.tu-dortmund.de> wrote: > > > On 09.01.2010 19:04, anupam sinha wrote: > >> Hi Jim, >> Thanks for your suggestion. I trie

Re: [R] Directory operations

to determine which ones are the directories you want to > search. A list.files on that directory will give you the list of file names > that you can then process. > > > > > On Fri, Jan 8, 2010 at 12:41 PM, anupam sinha wrote: > >> Dear all, >>

[R] Directory operations

). What I want to do is to enter into the first directory read all the xml files do certain operations come out of the directory and do the same thing for another directory. Can anyone help me out ? Thanks in advance for any suggestions. Regards, Anupam Sinha [[alternative HTML version

[R] Help regarding frequency distribution Graphs

ould like to get a smooth curve between "P(k) vs k". I have already tried *"hist*" function in R but want something more specific. Can anyone help me out ? Thanks in advance. Regards, Anupam Sinha [[alternative HTML version deleted]] __

Re: [R] Problems in plotting with abline

_eco_bet) > abline(lmout) > > Regards, > Alain > > > > > anupam sinha wrote: > >> Dear R-users, >> I am using R(a package igraph) to calculate certain >> topological features of networks. When I try to draw a plot between

[R] Problems in plotting with abline

Thanks in advance. Regards, Anupam Sinha [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and

Re: [R] Fitting a trend-line

Thanks a lot for all your suggestions. Regards, Anupam [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-gui

[R] Fitting a trend-line

Hi all, I am new to R. How does one go about fitting a trend-line to a scatter plot? Any help is appreciated. Thanks and regards, Anupam [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/ma

[R] problem with "ls" command

item called "KEGG.db" on the search list and this is true for any package. Can anything be done ? Regards, Anupam Sinha, Graduate Student, Laboratory of Computational Biology, Centre for DNA fingerprinting and Diagnostics Hyderabad, India -

Re: [R] Unable to load R

ot; plugin rhel-x86_64-client-5 100% |=| 1.3 kB 00:00 Setting up Install Process Parsing package install arguments Package readline - 5.1-1.1.x86_64 is already installed. Package readline - 5.1-1.1.i386 is already installed. Nothing to do Plzz help me out. Cheers, Anupam S

[R] Unable to load R

or directory* I have checked for the presence of the above mention library and found that the library is present. I have run out of ideas. Can anyone help me out??? I will be greatly indebted. Cheers, Anupam Sinha, Graduate Student, Lab of Computational Biology, Centre for DNA Fingerprinting

[R] Unable to install R package

Hi all, I am unable to install R package on RHEL version 5.1. While running * ./configure* command following is printed on to the screen and no * makefile* is created. Can anyone help me out ??? Thanks in advance. ./configure checking build system type... x86_64-unknown-linux-gnu checki

[R] Problems with old version of R

Thanks in advance. Anupam Sinha [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] R-help Digest, Vol 74, Issue 20

Thanks in advance. Regards, Anupam Sinha [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide