Hi, Tenfei, I have two group of data composed of gene mutation and deletion on
specific sites. Will it be possible for me to use the Manhattan Plot for
comparison? Thank you for you attention! Li-Wu Guo, Ph.D.
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Just because it is possible to make a plot, doesn't mean it's a good idea.
It would depend on what you're trying to show. -- H
On 27 April 2013 17:21, lw...@yahoo.com lw...@yahoo.com wrote:
Hi, Tenfei, I have two group of data composed of gene mutation and
deletion on specific sites. Will it
Hello,
I am trying to create a simple Manhattan plot for a small list of 200 SNPs
spread out in the genome in different genes.
I have tried different functions (using ggplot2 and a function created by
Stephen Turner, mhtplot etc.)-none of them work smoothly.
Does anyone have a simple way to
Hello Einat,
Have you tried ggbio package's plotGrandLinear from bioconductor?
Best,
-m
On 8 January 2013 20:03, Einat Granot einatgra...@gmail.com wrote:
Hello,
I am trying to create a simple Manhattan plot for a small list of 200 SNPs
spread out in the genome in different genes.
I have
Hi Einat
As Mehmet suggested, you can try plotGrandlinear in ggbio. an example codes
in the manual are here
http://tengfei.github.com/ggbio/docs/man/plotGrandLinear.html
how to install
http://www.bioconductor.org/packages/2.11/bioc/html/ggbio.html
But one thing is confusing(Maybe I don't get it
To whom it may concern:
My name is Jillian Weinfeld. I am currently and undergraduate student at New
York University and working at Mount Sinai School of Medicine doing research
with epilepsy patients.
At the moment I am creating a manhattan plot with my data set. After reading
many forums
You need to supply some information about how you actually are plotting your
data so we can figure out what you've tried. Example code (with some toy
data) would be greatly appreciated.
Michael Weylandt
On Fri, Sep 9, 2011 at 11:40 AM, Weinfeld, Jillian
jillian.weinf...@mssm.edu wrote:
To
Hi Jillian,
Take a look at http://www.oga-lab.net/RGM2/func.php?rd_id=gap:mhtplot.
Best,
Jorge
*
*
On Fri, Sep 9, 2011 at 12:40 PM, Weinfeld, Jillian wrote:
To whom it may concern:
My name is Jillian Weinfeld. I am currently and undergraduate student at
New York University and working at
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