[R] Manhattan Plot

2013-04-27 Thread lw...@yahoo.com
Hi, Tenfei, I have two group of data composed of gene mutation and deletion on specific sites. Will it be possible for me to use the Manhattan Plot for comparison? Thank you for you attention! Li-Wu Guo, Ph.D. Sent from Windows Mail [[alternative HTML version deleted]]

Re: [R] Manhattan Plot

2013-04-27 Thread Hasan Diwan
Just because it is possible to make a plot, doesn't mean it's a good idea. It would depend on what you're trying to show. -- H On 27 April 2013 17:21, lw...@yahoo.com lw...@yahoo.com wrote: Hi, Tenfei, I have two group of data composed of gene mutation and deletion on specific sites. Will it

[R] Manhattan Plot

2013-01-08 Thread Einat Granot
Hello, I am trying to create a simple Manhattan plot for a small list of 200 SNPs spread out in the genome in different genes. I have tried different functions (using ggplot2 and a function created by Stephen Turner, mhtplot etc.)-none of them work smoothly. Does anyone have a simple way to

Re: [R] Manhattan Plot

2013-01-08 Thread Suzen, Mehmet
Hello Einat, Have you tried ggbio package's plotGrandLinear from bioconductor? Best, -m On 8 January 2013 20:03, Einat Granot einatgra...@gmail.com wrote: Hello, I am trying to create a simple Manhattan plot for a small list of 200 SNPs spread out in the genome in different genes. I have

Re: [R] Manhattan Plot

2013-01-08 Thread Tengfei Yin
Hi Einat As Mehmet suggested, you can try plotGrandlinear in ggbio. an example codes in the manual are here http://tengfei.github.com/ggbio/docs/man/plotGrandLinear.html how to install http://www.bioconductor.org/packages/2.11/bioc/html/ggbio.html But one thing is confusing(Maybe I don't get it

[R] Manhattan Plot

2011-09-09 Thread Weinfeld, Jillian
To whom it may concern: My name is Jillian Weinfeld. I am currently and undergraduate student at New York University and working at Mount Sinai School of Medicine doing research with epilepsy patients. At the moment I am creating a manhattan plot with my data set. After reading many forums

Re: [R] Manhattan Plot

2011-09-09 Thread R. Michael Weylandt
You need to supply some information about how you actually are plotting your data so we can figure out what you've tried. Example code (with some toy data) would be greatly appreciated. Michael Weylandt On Fri, Sep 9, 2011 at 11:40 AM, Weinfeld, Jillian jillian.weinf...@mssm.edu wrote: To

Re: [R] Manhattan Plot

2011-09-09 Thread Jorge I Velez
Hi Jillian, Take a look at http://www.oga-lab.net/RGM2/func.php?rd_id=gap:mhtplot. Best, Jorge * * On Fri, Sep 9, 2011 at 12:40 PM, Weinfeld, Jillian wrote: To whom it may concern: My name is Jillian Weinfeld. I am currently and undergraduate student at New York University and working at