[R] boxplot - code for labeling outliers - any suggestions for improvements?

2011-01-26 Thread Tal Galili
Hello all, I wrote a small function to add labels for outliers in a boxplot. This function will only work on a simple boxplot/formula command (e.g: something like boxplot(y~x)). Code + example follows in this e-mail. I'd be happy for any suggestions on how to improve this code, for example:

Re: [R] boxplot - code for labeling outliers - any suggestions for improvements?

2011-01-26 Thread Greg Snow
: [R] boxplot - code for labeling outliers - any suggestions for improvements? Hello all, I wrote a small function to add labels for outliers in a boxplot. This function will only work on a simple boxplot/formula command (e.g: something like boxplot(y~x)). Code + example follows in this e

Re: [R] boxplot: reverse y-axis order

2010-11-22 Thread S Ellison
A simple alternative is to use at to contrl plot locations: boxplot( ..., at=rev(1:nlevels(depthM))) which just rearranges where they are plotted. Example: set.seed(1023) x - gl(5, 5) y-rnorm(25) boxplot(y~x, horizontal=TRUE) boxplot(y~x, at=rev(1:nlevels(x)), , horizontal=TRUE) Steve E

[R] boxplot: reverse y-axis order

2010-11-21 Thread emorway
Hello, Searching this forum has enabled me to get pretty far in what I'm trying to do. However, there is one more manipulation I would like to make and I haven't found a solution. Using the data and code below, I generate the plot produced by the last command. If possible I would like to

Re: [R] boxplot: reverse y-axis order

2010-11-21 Thread Uwe Ligges
On 21.11.2010 20:30, emorway wrote: Hello, Searching this forum has enabled me to get pretty far in what I'm trying to do. However, there is one more manipulation I would like to make and I haven't found a solution. Using the data and code below, I generate the plot produced by the last

[R] boxplot of timeseries with different lengths

2010-11-03 Thread Simone Gabbriellini
Hello List, I have a time serie of observations representing the activity of some users in different time periods, like: table(obs1) user1 user2 user3 user31 user33 user4 user5 user6 user7 user8 user82 user83 user85 user9 1 1 3 1 1 1

[R] boxplot ranked x labels

2010-10-18 Thread Sibylle Stöckli
Dear R users, x-values (EI) = Adw, EG1, LA1, Ad1, LA2, LA3...(14 levels, insect stages) y-valus = antpop within the boxplot function x-values are ordered alphabetically Idea: x-values ranked by list order (insect stage: Egg stage 1 is followed by Larvae 1 and not by Egg stage 2 as it

Re: [R] boxplot ranked x labels

2010-10-18 Thread Phil Spector
Sibylle - Since you didn't give a reproducible example, I'll try to make one that will illustrate what you need to know to answer your question. Suppose we have a variable with levels four,five, and six. ff = factor(rep(c('four','five','six'),c(5,7,2))) Since the table() function will

Re: [R] boxplot issue

2010-10-16 Thread Jim Lemon
On 10/16/2010 12:50 AM, Jonas Josefsson wrote: Hi! I am trying to produce a graph which shows overlap in latitude for a number of species. I have a dataframe which looks as follows species1,species2,species3,species4. minlat 6147947,612352,627241,6112791 maxlat

[R] boxplot issue

2010-10-15 Thread Jonas Josefsson
Hi! I am trying to produce a graph which shows overlap in latitude for a number of species. I have a dataframe which looks as follows species1,species2,species3,species4. minlat 6147947,612352,627241,6112791 maxlat 7542842,723423,745329,7634921 I

Re: [R] boxplot issue

2010-10-15 Thread David Winsemius
A) you hijacked another thread. On Oct 15, 2010, at 9:50 AM, Jonas Josefsson wrote: Hi! I am trying to produce a graph which shows overlap in latitude for a number of species. I have a dataframe which looks as follows species1,species2,species3,species4. minlat

Re: [R] Boxplot has only one whisker

2010-10-14 Thread tom
You should provide raw data to boxplot(), not summary stats. If you want to input summary stats, there was a post some time ago on that: http://finzi.psych.upenn.edu/Rhelp10/2010-September/251674.html \quoate Overwriting $stats did the job for me. I wanted to show the effect of using

[R] Boxplot has only one whisker

2010-10-13 Thread tom
Hello! I am using box plot and one of my boxes has only one whisker. How can I change this? Code: bp-c(2.7, 3.1, 3.5, 8.95) Methode1 - quantile(bp,type = 7) Methode2 - quantile(bp,type = 2) d-data.frame(Methode1,Methode2) boxplot(d,ylab = Beispiel 1,range = 1.5)

Re: [R] Boxplot has only one whisker

2010-10-13 Thread Ivan Calandra
Try with more data points?! You have only five points, the last one being considered as outlier. Note that boxplot() requires a numeric vector for specifying data from which the boxplots are to be produced! HTH Ivan Le 10/13/2010 09:50, tom a écrit : Hello! I am using box plot and one of

Re: [R] Boxplot has only one whisker

2010-10-13 Thread tom
Ivan Calandra wrote: Try with more data points?! You have only five points, the last one being considered as outlier. Note that boxplot() requires a numeric vector for specifying data from which the boxplots are to be produced! But why is only one of the boxplots missing his whisker?

Re: [R] Boxplot has only one whisker

2010-10-13 Thread Ivan Calandra
Well, you don't use the same data for both. Type 2 and 7 give different values for the 25 and 75%, which correspond more or less to the box hinges. If you take a look at how the whiskers are defined (look at ?boxplot.stats): |coef| this determines how far the plot ‘whiskers’ extend out from

Re: [R] Boxplot has only one whisker

2010-10-13 Thread David Winsemius
On Oct 13, 2010, at 5:06 AM, Ivan Calandra wrote: Well, you don't use the same data for both. Type 2 and 7 give different values for the 25 and 75%, which correspond more or less to the box hinges. If you take a look at how the whiskers are defined (look at ? boxplot.stats): |coef| this

Re: [R] boxplot

2010-09-29 Thread Joshua Wiley
Dear Felipe, Assuming you are not interested in the exact formulae that are used to calculate each of these, from top to bottom it is: minimum, lower quartile, median, upper quartile, maximum If there are dots, these usually indicate outliers. Please read ?boxplot for more details on what R

Re: [R] boxplot

2010-09-29 Thread Dennis Murphy
http://www.netmba.com/statistics/plot/box/ ...found via Google search. HTH, Dennis On Tue, Sep 28, 2010 at 10:06 PM, Luis Felipe Parra felipe.pa...@quantil.com.co wrote: Hello, does somebody know in a boxplot, what does each element in the boxplot represent? 1. lines at the extremes of

[R] boxplot

2010-09-28 Thread Luis Felipe Parra
Hello, does somebody know in a boxplot, what does each element in the boxplot represent? 1. lines at the extremes of the dotted lines? 2. Extremes of the boxes 3. Black line in the middle of the box? 4. notches? Thank you Felipe Parra [[alternative HTML version deleted]]

Re: [R] boxplot knowing Q1, Q3, median, upper and lower whisker value

2010-09-10 Thread Peng, C
x=1:16 S=summary(x) S Min. 1st Qu. MedianMean 3rd Qu.Max. 1.004.758.508.50 12.25 16.00 S[-4] Min. 1st Qu. Median 3rd Qu.Max. 1.004.758.50 12.25 16.00 par(mfrow=c(1,2)) boxplot(S[-4]) # based on the summarized stats boxplot(x)

Re: [R] boxplot knowing Q1, Q3, median, upper and lower whisker value

2010-09-10 Thread Greg Snow
- project.org] On Behalf Of Brian Diggs Sent: Thursday, September 09, 2010 1:41 PM To: David A. Cc: R-help Subject: Re: [R] boxplot knowing Q1, Q3, median, upper and lower whisker value On 9/6/2010 8:46 AM, David A. wrote: Dear list, I am using a external program that outputs Q1, Q3, median

Re: [R] boxplot knowing Q1, Q3, median, upper and lower whisker value

2010-09-10 Thread William Dunlap
is.nan(bd.coerce(as.bdVector(c(1.0, N -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Brian Diggs Sent: Thursday, September 09, 2010 12:41 PM To: David A. Cc: R-help Subject: Re: [R] boxplot knowing Q1, Q3, median,upper

Re: [R] boxplot knowing Q1, Q3, median, upper and lower whisker value

2010-09-09 Thread Brian Diggs
On 9/6/2010 8:46 AM, David A. wrote: Dear list, I am using a external program that outputs Q1, Q3, median, upper and lower whisker values for various datasets simultaneously in a tab delimited format. After importing this text file into R, I would like to plot a boxplot using these given

[R] boxplot knowing Q1, Q3, median, upper and lower whisker value

2010-09-06 Thread David A.
Dear list, I am using a external program that outputs Q1, Q3, median, upper and lower whisker values for various datasets simultaneously in a tab delimited format. After importing this text file into R, I would like to plot a boxplot using these given values and not the original series of

Re: [R] boxplot knowing Q1, Q3, median, upper and lower whisker value

2010-09-06 Thread Joshua Wiley
Hi Dave, You can look at the function ?bxp it might work for you. Alternately, create a meaningless boxplot object, and then just edit that data, in which case I know it will work with bxp(). # Create a boxplot, the data does not matter x - boxplot(1:10) x # view the data for the boxplot

Re: [R] Boxplot: Scale outliers

2010-07-14 Thread Peter Ehlers
On 2010-07-13 12:11, Robert Peter wrote: Hello! I am trying to scale the outliers in a boxplot. I am passing pars = list(boxwex=0.1, staplewex=0.1, outwex=0.1) to the boxplot command. The boxes are scaled correctly, but the circles (outliers) are not scaled at all, and thus pretty big compared

[R] Boxplot: Scale outliers

2010-07-13 Thread Robert Peter
Hello! I am trying to scale the outliers in a boxplot. I am passing pars = list(boxwex=0.1, staplewex=0.1, outwex=0.1) to the boxplot command. The boxes are scaled correctly, but the circles (outliers) are not scaled at all, and thus pretty big compared to the boxes scaled with 0.1. Am I

[R] boxplot on all the columns

2010-07-12 Thread jd6688
how to use boxplot on all the columns from he date frame instead of manually entering the columns like below bhtest1 - read.table(bhtest1.txt, header=TRUE) boxplot (bhtest1[,2], bhtest1[,3], bhtest1[, 4], bhtest1[,5], bhtest1[,6], bhtest1[,7]) please help, Thanks, -- View this

Re: [R] boxplot on all the columns

2010-07-12 Thread Tal Galili
Actually, boxplot (bhtest1) Should do what you want... Tal Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) | www.r-statistics.com

Re: [R] boxplot on all the columns

2010-07-12 Thread Joshua Wiley
On Sun, Jul 11, 2010 at 11:17 PM, Tal Galili tal.gal...@gmail.com wrote: Actually, boxplot (bhtest1) Should do what you want... Just a quick follow up, if you wanted a separate plot for each column (I'm imagining the data resulting from your cbind() of 30 files in your other thread for

[R] boxplot width

2010-06-24 Thread nana
Hi everyone, I made this set of boxplots that would show me the widths of some sites broken up by some chromosome, but I don't know how to make it indicate the number of data points that created the boxplot. How do I do that? boxplot(data$site~data$chr,varwidth='TRUE') -- View this message

Re: [R] boxplot width

2010-06-24 Thread Tal Galili
Does: boxplot(data$site~data$chr, varwidth=TRUE) (notice I removed the ' ' from the 'TRUE') Work ? Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) |

Re: [R] boxplot width

2010-06-24 Thread nana
it works with the 'TRUE' as well but this only shows me the boxplots width; it doesn't show me the number of data points used though.. This is what I can't figure out -- View this message in context: http://r.789695.n4.nabble.com/boxplot-width-tp2266805p2266932.html Sent from the R help mailing

Re: [R] boxplot width

2010-06-24 Thread David Winsemius
On Jun 24, 2010, at 7:45 AM, nana wrote: Hi everyone, I made this set of boxplots that would show me the widths of some sites broken up by some chromosome, but I don't know how to make it indicate the number of data points that created the boxplot. How do I do that?

Re: [R] boxplot width

2010-06-24 Thread Hrishi Mittal
nana, If you save the boxplot as an R object, you can access various parameters of the resulting plot. Since we don't have your data, I'll give you an example with the preloaded ToothGrowth dataset: ToothGrowth-y b-boxplot(y$len~y$dose,xaxt=n) Now, if you type b at the R prompt, you will see

Re: [R] boxplot width

2010-06-24 Thread Petr PIKAL
Hi r-help-boun...@r-project.org napsal dne 24.06.2010 15:18:39: it works with the 'TRUE' as well but this only shows me the boxplots width; it doesn't show me the number of data points used though.. This is what I can't figure out Save your boxplot call to same object bbb -

Re: [R] boxplot width

2010-06-24 Thread nana
Thank you. It worked. Regards -- View this message in context: http://r.789695.n4.nabble.com/boxplot-width-tp2266805p2267050.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list

[R] Boxplot intervals combining names

2010-06-13 Thread RCulloch
Hi R users, This seems like a simple problem but I have searched nabble for the answer and can't seem to find it. All I want to do is produce a boxplot where I have two boxes for one Individual but on the xaxis I only have one tick mark centred between the boxes so I can add the Individuals'

Re: [R] Boxplot intervals combining names

2010-06-13 Thread Sarah Goslee
Hi Ross, You are indeed missing something simple. If there are 60 bars, the axis runs from 1 to 60, and you want a label at every second one, rather than at every one. Like this (with 10 instead of 60): testdata - matrix(runif(100), ncol=10) boxplot(testdata, xaxt=n) axis(1, at=seq(1.5, 9.5,

[R] Boxplot: what is shown by default?

2010-06-04 Thread Thomas von Känel
hi, i'm using /boxplot()/ to show some data: x - c(0.99, 0.97, 0.91, 0.72, 1.00, 0.99, 1.02, 0.90, 0.91, 0.90, 1.02, 0.90, 1.35, 1.01, 0.92) boxplot(x) is it correct when i say: /Boxes represent interquartile ranges (IQRs); bold horizontal lines, medians; whiskers, lowest and highest values

Re: [R] Boxplot: what is shown by default?

2010-06-04 Thread Peter Ehlers
On 2010-06-04 0:14, Thomas von Känel wrote: hi, i'm using /boxplot()/ to show some data: x- c(0.99, 0.97, 0.91, 0.72, 1.00, 0.99, 1.02, 0.90, 0.91, 0.90, 1.02, 0.90, 1.35, 1.01, 0.92) boxplot(x) is it correct when i say: /Boxes represent interquartile ranges (IQRs); bold horizontal lines,

[R] Boxplot position on X-axis relative to it's value

2010-05-12 Thread Mächler Marc Jaques
Dear R-Experts. I collected different datas about Nitrogen content (mg/ml) in Dung. The dung was eighter fresh (day=0) or had different ages (15,29,47) to observe nutrient changes over time. Now I like to draw a boxplot. boxplot(nmgml~day) abline((nmgml~day) The Problem is, that the boxplot

Re: [R] Boxplot position on X-axis relative to it's value

2010-05-12 Thread RICHARD M. HEIBERGER
You can use the bwplot panel in the HH package. You might need to install HH first, by uncommenting the line below. girafe.txt - textConnection( day nmgml 1 29 2.72655 2 29 2.48820 3 15 2.85945 4 15 2.58915 5 15 2.88345 6 15 2.66675 7 47 3.29125 8 15 2.44085 9 29 2.43065

Re: [R] Boxplot position on X-axis relative to it's value

2010-05-12 Thread Henrique Dallazuanna
One option could be: # Using Richard's example boxplot(nmgml ~ factor(day, levels = do.call(seq, as.list(range(girafe$day, data = girafe, xaxt = 'n') axis(1, at = unique(girafe$day)) On Wed, May 12, 2010 at 10:30 AM, Mächler Marc Jaques ma...@student.ethz.ch wrote: Dear R-Experts.

Re: [R] Boxplot position on X-axis relative to it's value

2010-05-12 Thread Dennis Murphy
Hi: Here are a couple of ways to superimpose the boxplots with a line, using lattice and latticeExtra. Notice that the boxplots are located at the observed x values - the idea comes straight out of the example on p. 183 of the Lattice book. library(lattice) library(latticeExtra) # Connect the

Re: [R] Boxplot position on X-axis relative to it's value

2010-05-12 Thread Felix Andrews
Dennis, this works for me: xyplot(nmgml ~ day, data = girafe, horizontal = FALSE, panel = function(...) { panel.bwplot(...) panel.average(..., fun = median, col.line = 'gray30') } ) On 13 May 2010 06:29, Dennis Murphy djmu...@gmail.com wrote: Hi: Here

[R] boxplot, vertical position of x-axis labels

2010-03-16 Thread Kay Cichini
hello, i can't figure out how to change the vertical position of my x axis labels.. boxplot(c(1:12)~c(rep(1,6),rep(2,6)),at=c(1,2), col=c(0,grey),las=1,xaxt=n) ### i put paragraphs in the x-labels because of limited horizontal space axis(1,at=c(1,2),adj=1,labels=c(Salix Scrub,Tall Forb))

Re: [R] boxplot, vertical position of x-axis labels

2010-03-16 Thread David Winsemius
On Mar 16, 2010, at 9:37 AM, Kay Cichini wrote: hello, i can't figure out how to change the vertical position of my x axis labels.. boxplot(c(1:12)~c(rep(1,6),rep(2,6)),at=c(1,2), col=c(0,grey),las=1,xaxt=n) ### i put paragraphs in the x-labels because of limited horizontal space

[R] boxplot - vertical axis

2010-02-17 Thread ErikRH
In the function boxplot: Is it possible to have the numbers on the vertical axix written horizontally (so that tilting of the head is unneccessary)? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

Re: [R] boxplot - vertical axis

2010-02-17 Thread Peter Alspach
-help-boun...@r-project.org] On Behalf Of ErikRH Sent: Thursday, 18 February 2010 9:06 a.m. To: r-help@r-project.org Subject: [R] boxplot - vertical axis In the function boxplot: Is it possible to have the numbers on the vertical axix written horizontally (so that tilting of the head

[R] boxplot label cleanup

2010-02-10 Thread emorway
The boxplot below is close to what I would like, but needs some clean up. I've been unable to address the following: 1) How can I use the full extent of the plot space (there is white space on either side of the data)? 2) How can I reduce the # of month labels (e.g. every 3rd month Jan Mar

Re: [R] Boxplot- input the median point and the median value

2010-01-10 Thread elaine kuo
Hello Jim, I tried your approach on box plot, and it is useful. Thanks. However, I wanna add the mean value right or left to the mean point. (as attached) Please kindly share if it is possible and thanks again. Elaine On Sat, Jan 2, 2010 at 5:01 PM, Jim Lemon j...@bitwrit.com.au wrote: On

[R] boxplot help

2010-01-06 Thread oscar linares
Dear Rexperts, I am trying to add a '+' identifying the mean in a boxplot using the following sizelist - split(size, grp) centers - boxplot(sizelist, style.bxp = att, medpch = o, ylab = Prostate Volume (cm3)) points(centers, unlist(lapply(sizelist, mean)), pch = +) But, I

Re: [R] boxplot help

2010-01-06 Thread Dennis Murphy
Hi: Try this: First put your data into a data frame (it's not necessary, but it's easier) ol - data.frame(grp = grp, size = size) boxplot(size ~ grp, data = ol, style = 'att', medpch = o, ylab = Prostate Volume (cm3)) mns - with(ol, tapply(size, grp, mean)) points(1:5, mns, pch = '+')

Re: [R] Boxplot- change the vertical line from dash to solid

2010-01-04 Thread Dieter Menne
elaine kuo wrote: Now I am learning to draw boxplot using graphics(). I want to change the vertical line penetrating the box from dashed line to solid line Check the documentation on bxp; there is an example mimic S-Plus that shows how to customize boxplot. Dieter -- View this

Re: [R] Boxplot- change the vertical line from dash to solid

2010-01-04 Thread elaine kuo
Dear Dieter, Thanks for the info. However, I did not know which document you refer to. Please kindly indicate the website or the source. Thank you Elaine On Mon, Jan 4, 2010 at 4:24 PM, Dieter Menne dieter.me...@menne-biomed.dewrote: elaine kuo wrote: Now I am learning to draw boxplot

Re: [R] Boxplot- input the median point and the median value

2010-01-02 Thread Jim Lemon
On 01/02/2010 12:53 PM, elaine kuo wrote: Dear, I am a newbie to R. Now I am learning to draw boxplot using graphics(). I want to highlight the median position with a round point and the value left (or on the top of)to the point. Hi Elaine, For your boxplot questions, I'll use the

[R] Boxplot- change y axis partition

2010-01-01 Thread elaine kuo
Hello, I am a newbie to R. Now I am learning to draw boxplot using graphics(). I want to change the default setting of y asix. from 0, 0.1, 0.2,0.8 to 0, 0.4, 0.8. Please kindly share the command and thank you. Elaine [[alternative HTML version deleted]]

[R] Boxplot- change the vertical line from dash to solid

2010-01-01 Thread elaine kuo
Dear, I am a newbie to R. Now I am learning to draw boxplot using graphics(). I want to change the vertical line penetrating the box from dashed line to solid line Please kindly share the command and thank you. Elaine [[alternative HTML version deleted]]

[R] Boxplot- input the median point and the median value

2010-01-01 Thread elaine kuo
Dear, I am a newbie to R. Now I am learning to draw boxplot using graphics(). I want to highlight the median position with a round point and the value left (or on the top of)to the point. Please kindly share the command and thank you. Elaine [[alternative HTML version deleted]]

Re: [R] Boxplot- input the median point and the median value

2010-01-01 Thread milton ruser
Dear Elaine, The posting guide is http://www.R-project.org/posting-guide.htmlhttp://www.r-project.org/posting-guide.html bests milton On Fri, Jan 1, 2010 at 8:53 PM, elaine kuo elaine.kuo...@gmail.com wrote: Dear, I am a newbie to R. Now I am learning to draw boxplot using graphics().

Re: [R] boxplot question

2009-11-23 Thread Antje
Peter Ehlers wrote: If there's been an answer to this, I've missed it. Here's my take. Antje wrote: Hi there, I was wondering if anybody can explain to me why the boxplot ends up with different results in the following case: I have some integer data as a vector and I compare the stats of

Re: [R] boxplot question

2009-11-23 Thread Peter Ehlers
Antje wrote: Peter Ehlers wrote: If there's been an answer to this, I've missed it. Here's my take. Antje wrote: Hi there, I was wondering if anybody can explain to me why the boxplot ends up with different results in the following case: I have some integer data as a vector and I compare

[R] boxplot question

2009-11-20 Thread Antje
Hi there, I was wondering if anybody can explain to me why the boxplot ends up with different results in the following case: I have some integer data as a vector and I compare the stats of boxplot with the same data divided by a factor. I've attached a csv file with both data present (d1,

Re: [R] boxplot question

2009-11-20 Thread Peter Ehlers
If there's been an answer to this, I've missed it. Here's my take. Antje wrote: Hi there, I was wondering if anybody can explain to me why the boxplot ends up with different results in the following case: I have some integer data as a vector and I compare the stats of boxplot with the same

[R] boxplot

2009-11-18 Thread Sukhbir Rattan
Hi, I have simple query In which package drawBoxplot function is available? Regards, Sukhbir Singh Rattan [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] boxplot

2009-11-18 Thread Tal Galili
I believe drawBoxplot doesn't exist. Are you looking for ?boxplot ? Tal -- My contact information: Tal Galili E-mail: tal.gal...@gmail.com Phone number: 972-52-7275845 FaceBook: Tal Galili My Blogs: http://www.talgalili.com (Web and general,

Re: [R] boxplot, data frame and html

2009-10-29 Thread Silvano
-help@r-project.org Cc: Silvano silv...@uel.br Sent: Wednesday, October 28, 2009 10:08 AM Subject: Re: [R] boxplot, data frame and html Hello Silvano, 'hwrite' appends HTML elements in a web page. The web page has to be opened before adding elements in it. The following code should work

[R] boxplot, data frame and html

2009-10-28 Thread Silvano
Hi, I'm trying put in same page: - a data frame with 3 columns and 45 lines; - a box plot; the code is: require(hwriter) hwrite(t1000[,c(1,5,6)], 'T1000.html', bgcolor='#ffdc98', row.bgcolor='#ffdc98', br=TRUE) p = openPage('T1000.html') hwriteImage('caixa.jpg', p, br=TRUE)

Re: [R] boxplot, data frame and html

2009-10-28 Thread Gregoire Pau
Hello Silvano, 'hwrite' appends HTML elements in a web page. The web page has to be opened before adding elements in it. The following code should work: require(hwriter) p = openPage('T1000.html') hwrite(t1000[,c(1,5,6)], p, bgcolor='#ffdc98', row.bgcolor='#ffdc98', br=TRUE)

[R] boxplot using grid

2009-10-27 Thread Stefan JansevanRensburg
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[R] Boxplot with grouped data

2009-10-22 Thread Paul Smith
Dear All, Is there some way of drawing a boxplot, with R, when one does not have the original continuous data, but only the data grouped in classes? The function boxplot() can only deal with original data. Thanks in advance, Paul __

Re: [R] Boxplot with grouped data

2009-10-22 Thread Peter Flom
Paul Smith phh...@gmail.com wrote Is there some way of drawing a boxplot, with R, when one does not have the original continuous data, but only the data grouped in classes? The function boxplot() can only deal with original data. It's not clear how the data are, now. What are the classes? Are

Re: [R] Boxplot with grouped data

2009-10-22 Thread Jakson A. Aquino
On Thu, Oct 22, 2009 at 04:36:22PM +0100, Paul Smith wrote: Is there some way of drawing a boxplot, with R, when one does not have the original continuous data, but only the data grouped in classes? The function boxplot() can only deal with original data. Do you mean a numeric vector grouped

Re: [R] Boxplot with grouped data

2009-10-22 Thread Paul Smith
On Thu, Oct 22, 2009 at 5:31 PM, Jakson A. Aquino jaksonaqu...@gmail.com wrote: Is there some way of drawing a boxplot, with R, when one does not have the original continuous data, but only the data grouped in classes? The function boxplot() can only deal with original data. Do you mean a

[R] boxplot

2009-09-17 Thread Sukhbir Rattan
Hi, I m not able to plot normalized data(normalization by rma) using boxplot. I don't know why? basically, object(formed of normalized data) belong to ExpressionSet class. It is showing error Error in x[!xna] : object of type 'S4' is not subsettable In addition: Warning messages: 1: In is.na(x)

[R] boxplot with log=y and values starting at 0

2009-08-20 Thread Anne Skoeries
Hi, I'm working with a data.frame containing values between 0 and 22000. Most of the values are actually between 0 and 50 and the high ones are outliers. I want to generate a boxplot and since the outliers are extremely high, I need to scale the y scale logarithmically. Otherwise one

Re: [R] boxplot with log=y and values starting at 0

2009-08-20 Thread John Kane
much smaller. --- On Thu, 8/20/09, Anne Skoeries h...@anne-skoeries.de wrote: From: Anne Skoeries h...@anne-skoeries.de Subject: [R] boxplot with log=y and values starting at 0 To: r-help@r-project.org Received: Thursday, August 20, 2009, 9:15 AM Hi, I'm working with a data.frame

Re: [R] boxplot with log=y and values starting at 0

2009-08-20 Thread Allan Engelhardt
On 20/08/09 14:15, Anne Skoeries wrote: Hi, I'm working with a data.frame containing values between 0 and 22000. Most of the values are actually between 0 and 50 and the high ones are outliers. I want to generate a boxplot and since the outliers are extremely high, I need to scale the y scale

Re: [R] boxplot( ) headers with Greek letters, values, and text

2009-08-03 Thread cameron.bracken
Johnson, Roger W. wrote: Any suggestions on how I can produce the same title using the boxplot command? If you use LaTeX you could try the tikzDevice package ( https://r-forge.r-project.org/projects/tikzdevice/ ). In that case you would use: main = paste('\\mu =',mu,', \\lambda

Re: [R] boxplot( ) headers with Greek letters, values, and text

2009-08-03 Thread Gabor Grothendieck
Try this: boxplot(1:5, main = bquote(mu == .(mu) * , ~ lambda == .(lambda) * , ~ trunction == .(truncation) * , ~ N[T] == .(n))) On Sun, Aug 2, 2009 at 8:37 PM, Johnson, Roger W.roger.john...@sdsmt.edu wrote: Hi - I've been using the option main=bquote(paste(mu==.(mu),,

Re: [R] boxplot( ) headers with Greek letters, values, and text

2009-08-03 Thread Johnson, Roger W.
Thank you! (This works.) Roger From: Gabor Grothendieck [ggrothendi...@gmail.com] Sent: Monday, August 03, 2009 12:29 PM To: Johnson, Roger W. Cc: r-help@R-Project.org Subject: Re: [R] boxplot( ) headers with Greek letters, values, and text Try

[R] boxplot( ) headers with Greek letters, values, and text

2009-08-02 Thread Johnson, Roger W.
Hi - I've been using the option main=bquote(paste(mu==.(mu),, ,lambda==.(lambda),, ,truncation==.(truncation),, ,N[T]==.(n))) to produce a title when using the plot command - a title which includes variable names (two Greek) along with their values. The above option, however, does not work

[R] Boxplot with dates

2009-06-29 Thread Mafalda Viana
Dear R users, I am having problems making a boxplot across time. I wish to plot the Values (y-axis) against Date (x-axis) but would like the Date to be sequential from 2007-11-15 until 2008-01-31 (therefore there will be lots of NA's e.g. from 2007-11-16 to 2007-11-26 nothing will show in the

Re: [R] boxplot size

2009-06-15 Thread luscinia
Yes, I have tried to change plot dimensions using the height and width functions for layout, but this only seems to change the matrix dimensions the plots stay the same size. I am probably doing something wrong, but I don't know what. David Winsemius wrote: Have you actually looked at the

[R] boxplot size

2009-06-14 Thread luscinia
Hey everybody, I am trying to generate multiple boxplots on one page by using the layout () function. This works really well but the plots are always badly proportioned (3 times wider than high) and much too small to be easily readable. I have tried reducing margins to allow for bigger plots,

Re: [R] boxplot size

2009-06-14 Thread David Winsemius
Have you actually looked at the help page for layout()? -- David Winsemius On Jun 14, 2009, at 7:35 AM, luscinia wrote: Hey everybody, I am trying to generate multiple boxplots on one page by using the layout () function. This works really well but the plots are always badly

Re: [R] boxplot

2009-05-28 Thread Dieter Menne
amor Gandhi wrote: Hi gues, This should read: Hi, guess what I want   amor Gandhi wrote: Is there any function in R for boxplot with different time points? t1 - c(rep(1,20),rep(2,20)) t2 - c(rep(1,10),rep(2,10),rep(1,10),rep(2,10)) x - rnorm(40,5,1) dat - data.frame(t1,t2,x)

[R] boxplot

2009-05-27 Thread amorigandhi
Hi gues,   Is there any function in R for boxplot with different time points? t1 - c(rep(1,20),rep(2,20)) t2 - c(rep(1,10),rep(2,10),rep(1,10),rep(2,10)) x - rnorm(40,5,1) dat - data.frame(t1,t2,x) boxplot(x~t1,t2) Many thanks, Amor [[alternative HTML version deleted]]

Re: [R] boxplot

2009-05-27 Thread stephen sefick
I don't understand what you want. On Wed, May 27, 2009 at 6:52 PM, amorigan...@yahoo.de wrote: Hi gues, Is there any function in R for boxplot with different time points? t1 - c(rep(1,20),rep(2,20)) t2 - c(rep(1,10),rep(2,10),rep(1,10),rep(2,10)) x - rnorm(40,5,1) dat -

[R] boxplot - margin settings

2009-04-29 Thread Antje
Hi there, I'm trying to solve a boxplot problem (should be simple, but I cannot find the solution...): data - list(long_name1_xxx = rnorm(100), long_name2_yy = rnorm(200)) boxplot(data , las = 2, mar = c(20,4,4,4)) Why does the margin not change

Re: [R] boxplot - margin settings

2009-04-29 Thread Sarah Goslee
boxplot() isn't passing extra parameters in the way you'd expect. If you set par() first, it works fine. mar.orig - par()$mar # save the original values par(mar = c(20,4,4,4)) # set your new values boxplot(data, las = 2) par(mar = mar.orig) # put the original values back Sarah On Wed, Apr 29,

Re: [R] boxplot - margin settings

2009-04-29 Thread Antje
I knew the solution would be kind of simple... Thanks a lot, Sarah! Sarah Goslee schrieb: boxplot() isn't passing extra parameters in the way you'd expect. If you set par() first, it works fine. mar.orig - par()$mar # save the original values par(mar = c(20,4,4,4)) # set your new values

[R] boxplot of two variables

2009-04-23 Thread Gabriel R. Rodriguez
Hello ! I have a dataframe with 6 variables (A1,A2,B1,B2,C1,C2) and 1 factor (F). I would like to produce a graph consisting of 3 boxplots sets, one for every two variables (i.e A1 A2) by the factor (F). I was looking around and I cannot figure it out, any suggestions? Best Regards,

Re: [R] boxplot of two variables

2009-04-23 Thread Mike Lawrence
Check out ggplot2: http://had.co.nz/ggplot2 especially: http://had.co.nz/ggplot2/geom_boxplot.html But you are strongly advised to read the book: http://had.co.nz/ggplot2/book/ On Thu, Apr 23, 2009 at 12:13 PM, Gabriel R. Rodriguez garo...@cnia.inta.gov.ar wrote: Hello ! I have a

Re: [R] boxplot in subgroups

2009-03-26 Thread Annette Heisswolf
Hei, the error message below just tells you that you have specified nine places along the axis where you want to have labels (i.e. at=1:9) but obviously you have only specified three labels (i.e. labels = c(C,M,S)). Thus, R is complaining that there are not enough labels for all positions.

Re: [R] boxplot in subgroups

2009-03-26 Thread Pooja Jain
Thank you very much Annette, With your help I can do exactly what I wanted to. Best wishes, -Pooja On 26 Mar 2009, at 06:59, Annette Heisswolf wrote: Hei, the error message below just tells you that you have specified nine places along the axis where you want to have labels (i.e. at=1:9)

[R] boxplot in subgroups

2009-03-25 Thread Pooja Jain
Hi, I have data that looks like this: ASA1ASA2C1_C2 C M 9.0225 S S 2.4315 M C 3.4894 M S 4.5282 C M 1.3183 C S 1.3735 S C 1.0488 S M 7.948 M C 4.5827 I need to plot Boxplots for

Re: [R] Boxplot from matrices

2009-01-11 Thread johnhj
Thank you very much for you help... Carlos J. Gil Bellosta wrote: Hello, The following code may help you: my.matrix - matrix( rnorm(16), ncol = 4 ) boxplot( my.matrix ~ col( my.matrix ) ) Best regards, Carlos J. Gil Bellosta http://www.datanalytics.com On Sun,

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