Re: [R] Coxme penalized log-likelihood mismatch

2015-04-09 Thread Therneau, Terry M., Ph.D.
The perils of backwards compatability During computation the important quantity is loglik + penalty. That is what is contained in the third element of the loglik vector. Originally that is also what was printed, but I later realized that for statistical inference one wants the loglik an

[R] Coxme penalized log-likelihood mismatch

2015-04-08 Thread Alexandre Lafontaine
Hi,  I need to extract the penalized log-likehood term from coxme objects but I find the values stored whitin the object different than the penalized term given in the summary output of coxme function. Both the Null and the Integrated values are identical but the penalized is always off.  Any