Re: [R] limmaGUI anomaly: top-table & venn-diagram for linear model

2009-09-04 Thread Martin Morgan
d.le...@warwick.ac.uk wrote: > Hello, > > In limmaGUI, after running a linear model for a single gene & time point > (mutant vs control), the venn-diagram for differentially expressed genes > with a p-value cut-off gives a different number than the top-table with > the same cut-off (2600 vs. 791).

[R] limmaGUI anomaly: top-table & venn-diagram for linear model

2009-09-04 Thread D . Levin
Hello, In limmaGUI, after running a linear model for a single gene & time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I have seen the same thing happen befor