Liaw, Andy wrote:
One suggestion: After you break the check process, look at the file
C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R
and try to see if you can run that in batch mode.
You can also look into GeneticsPed-Ex.Rout that tells you where the
stuff hangs.
Uwe
Andy
From
Adaikalavan Ramasamy wrote:
You could try
rm( list=ls() ) # to remove all objects in a session
gc() # may return from R to operating system
but sometimes I find it just easier to kill and start a new R session.
There are other things that are different in a restart:
It sets the
Does anyone know how to plot a time series in Excel, please?
Sorry for the Bad off topic.
thanks,
Laura Holt
mailto: [EMAIL PROTECTED]
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Does anyone know how to extract residuals in lmer?
Here's the error I get:
>
crop.lme=lmer(response~variety*irrigation*pesticide+(1|rep)+(1|rep:
pesticide)+(1|rep:pesticide:irrigation), crop.data)
> qqnorm(crop.lme)
Error in qqnorm.default(crop.lme) : y is empty or has only NAs
> resid(crop.lme)
You could try
rm( list=ls() ) # to remove all objects in a session
gc() # may return from R to operating system
but sometimes I find it just easier to kill and start a new R session.
Regards, Adai
On Sat, 2005-04-23 at 15:26 +0100, Paul Smith wrote:
> Dear All
>
> Is there
On my FC3 for x86_64 (Athlon64 3000+) at home, R-patched from today compiled
just fine, and tcltk works. The version of tcl, tcl-devel, tk and tk-devel
are all 8.4.7-2.
Cheers,
Andy
> From: Jonathan Baron
>
> I installed from source on Fedora Core 3 starting with the
> command
>
> ./configure
On 24 April 2005 at 14:45, Gorjanc Gregor wrote:
| I suppose Debian packages of "base R" are updated accordingly to R patches,
| aren't they?
No, I tend to follow R Core and make release when actual minor release are
made. On the other hand, I try to help with alpha and beta releases during
the b
Christoph Lehmann a écrit :
Dear useRs
We have a data-set (comma delimited) with 12Millions of rows, and 5
columns (in fact many more, but we need only 4 of them): id, factor 'a'
(5 levels), factor 'b' (15 levels), date-stamp, numeric measurement. We
run R on suse-linux 9.1 with 2GB RAM, (and a
On 04/24/05 17:07, Roger D. Peng wrote:
I haven't had a problem building R 2.1.0 on FC3 and I've got the
tcl, tcl-devl, tk, and tk-devel rpms installed (and I don't use
the --with-tcltk configure switch). I've never downloaded the
R_Tcl.zip file.
Probably you're right. I just installed it on
I haven't had a problem building R 2.1.0 on FC3 and I've got the
tcl, tcl-devl, tk, and tk-devel rpms installed (and I don't use
the --with-tcltk configure switch). I've never downloaded the
R_Tcl.zip file.
Does 'configure' find the tcl/tk setup and then it fails to
compile or does 'configure
On Apr 24, 2005, at 8:52 AM, Douglas Bates wrote:
Jacob Michaelson wrote:
Hi All,
I'm taking an Experimental Design course this semester, and have
spent many long hours trying to coax the professor's SAS examples
into something that will work in R (I'd prefer that the things I
learn not be tied
look at:
AC Davison, DV Hinkley: Bootstrap Methods and Their Applications
there is also a R-library 'boot', based on methods reported in this book
C
Peter Soros wrote:
Dear R experts,
I would like to explore if and to what extent bootstrapping and
permutation statistics can help me for my research
On Sun, 2005-04-24 at 12:55 -0500, Dirk Eddelbuettel wrote:
> Actually, most of the time the dependency structure between Debian unstable
> and testing is such that the packages from unstable can be installed
> "straight through" into testing. Look at the apt-get HOWTO for the details on
> pinning
I installed from source on Fedora Core 3 starting with the
command
./configure --prefix=/usr --with-tcltk
(The --with-tcltk may not be necessary, but there seems to be
some correlation between using it and getting it to work.)
It would not compile with tcltk, even though I had both tcl and
tk rp
Dear useRs
We have a data-set (comma delimited) with 12Millions of rows, and 5
columns (in fact many more, but we need only 4 of them): id, factor 'a'
(5 levels), factor 'b' (15 levels), date-stamp, numeric measurement. We
run R on suse-linux 9.1 with 2GB RAM, (and a 3.5GB swap file).
on averag
On 24 April 2005 at 15:14, Federico Calboli wrote:
[...]
| Finally, Biodem has been build on a Debian Linux box and is therefore
| not yet available for Windows/OS X; Biodem was built with R 2.0.1
| because I am using Debian 'testing' and the new R 2.1.0 is not yet
| available for 'testing'. I wil
Hi folks!
Somehow I still write crappy code which is awefully
slow. Maybe as a case study,
could anybody give me a hint on how to improve the
following code for speed? d
is a 360x500 matrix.
Basically, each group of 5 columns represent a run.
For each run I aggregate
some columns, find which bi
Folks-
a patch release of bayesm, v0.0-1, is now available on CRAN. This release
corrects some errors in the help pages as well as one error in the function
rhierLinearModel involving an incorrect default prior setting.
peter
Peter E. Rossi
Joseph T. and Be
Together with Alessio Boattini of the University of Bologna we have
created a package called Biodem. Biodem provides a number of functions
for Biodemographycal analysis, and we hope it will be useful to the
anthropological community.
Because Biodem contains all the functions found in Malmig (a pac
According to the algorithm, what is divided by the number of slices is the
range of the response variable such that each slice has approximately the same
number of cases. Maybe the range of your response is very short or only takes
a small number of values. I did a small simulation with normal
Jacob Michaelson wrote:
Hi All,
I'm taking an Experimental Design course this semester, and have spent
many long hours trying to coax the professor's SAS examples into
something that will work in R (I'd prefer that the things I learn not be
tied to a license). It's been a long semester in that
Hello,
The mice package http://web.inter.nl.net/users/S.van.Buuren/mi/hmtl/mice.htm
is also potentially interesting.
It works with R 1.9 but not always with newer versions.
Best regards,
Bruno
Bruno Falissard
Département de
Hi All,
I'm taking an Experimental Design course this semester, and have spent
many long hours trying to coax the professor's SAS examples into
something that will work in R (I'd prefer that the things I learn not
be tied to a license). It's been a long semester in that regard.
One thing that
Luis Fernando Chaves wrote:
Hi,
I ran the following model using nlme:
model2<-lme(log(malrat1)~I(year-1982),random=~1|Continent/Country,data=wbmal10)
I'm trying to run a Poisson GlMM to avoid the above transformation but I
don't know how to specify the model using lmer in the lme4 library:
model3
Hello!
New version of R has came out and I would like to thank to all developers
on this matter. So I should probably upgrade. Fine and no problem. For
windows I just grab the latest precompiled binnaries and install them. Then
I see a report on a bug, which is or will be fixed in pacthed version
One suggestion: After you break the check process, look at the file
C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R
and try to see if you can run that in batch mode.
Andy
> From: Gorjanc Gregor
>
> Hello!
>
> I am building a package, which includes also one Fortran subroutine
Hello!
I am building a package, which includes also one Fortran subroutine,
which works fine if I compile it as a shared library and load it into
R via dyn.load(). However, when I launch R CMD check it doesn't stop
with checking examples. It's just doing and doing ... I pasted the
whole output f
Turns out that this is not a simple question. Depending on what
you want to do, some statistical methods will just deal with
missing data and use what is available, in different ways, e.g.,
cor(). For other purposes, you might want to "impute" (fill in)
the missing values, and then there are many
Hello,
I was just thinking about the same question. The
output in CART shows an overal sensitivity and
specificity of the tree built, plus cross-validation
result of overall sens and spec. I find this very
useful for interpretation of the value of a tree.
I didn't find this in the R output?
Greeti
Robert Chung wrote:
Liaw, Andy wrote:
To search among all CRAN (and BioC) packages, your
best best is RSiteSearch("fcn", restrict="function").
?RSiteSearch
No documentation for 'RSiteSearch' in specified packages and libraries:
you could try 'help.search("RSiteSearch")'
help.search("RSiteSearch")
Hello,
I have climatic data of various years with many missing values. I would like
to know what tools in R are most suited to estimate this missing values.
(New in R and quite new on statistics).
Thanks,
G
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Liaw, Andy wrote:
> To search among all CRAN (and BioC) packages, your
> best best is RSiteSearch("fcn", restrict="function").
> ?RSiteSearch
No documentation for 'RSiteSearch' in specified packages and libraries:
you could try 'help.search("RSiteSearch")'
> help.search("RSiteSearch")
No help fil
Hello,
While using the "plot" function against a model with a long formula,
I get a garbled label in the bottom of the plot. It looks like there are
two lines printed one over another, here's my example:
http://pico.magnum2.pl/maciej/NodalInvolvement/MisclassificationRate?action=AttachFile&do=get
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