[R] Garbled plot label

Hello, While using the plot function against a model with a long formula, I get a garbled label in the bottom of the plot. It looks like there are two lines printed one over another, here's my example:

Re: [R] How to know in which package is a function

Liaw, Andy wrote: To search among all CRAN (and BioC) packages, your best best is RSiteSearch(fcn, restrict=function). ?RSiteSearch No documentation for 'RSiteSearch' in specified packages and libraries: you could try 'help.search(RSiteSearch)' help.search(RSiteSearch) No help files found

[R] missing values

Hello, I have climatic data of various years with many missing values. I would like to know what tools in R are most suited to estimate this missing values. (New in R and quite new on statistics). Thanks, G __ R-help@stat.math.ethz.ch mailing list

Re: [R] How to know in which package is a function

Robert Chung wrote: Liaw, Andy wrote: To search among all CRAN (and BioC) packages, your best best is RSiteSearch(fcn, restrict=function). ?RSiteSearch No documentation for 'RSiteSearch' in specified packages and libraries: you could try 'help.search(RSiteSearch)' help.search(RSiteSearch) No

Re: [R] How to know if a classification tree is predicitve or not?

Hello, I was just thinking about the same question. The output in CART shows an overal sensitivity and specificity of the tree built, plus cross-validation result of overall sens and spec. I find this very useful for interpretation of the value of a tree. I didn't find this in the R output?

Re: [R] missing values

Turns out that this is not a simple question. Depending on what you want to do, some statistical methods will just deal with missing data and use what is available, in different ways, e.g., cor(). For other purposes, you might want to impute (fill in) the missing values, and then there are many

[R] R CMD check doesn't stop with checking examples

Hello! I am building a package, which includes also one Fortran subroutine, which works fine if I compile it as a shared library and load it into R via dyn.load(). However, when I launch R CMD check it doesn't stop with checking examples. It's just doing and doing ... I pasted the whole output

RE: [R] R CMD check doesn't stop with checking examples

One suggestion: After you break the check process, look at the file C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R and try to see if you can run that in batch mode. Andy From: Gorjanc Gregor Hello! I am building a package, which includes also one Fortran subroutine,

[R] Upgrading R

Hello! New version of R has came out and I would like to thank to all developers on this matter. So I should probably upgrade. Fine and no problem. For windows I just grab the latest precompiled binnaries and install them. Then I see a report on a bug, which is or will be fixed in pacthed

Re: [R] A question on the library lme4

Luis Fernando Chaves wrote: Hi, I ran the following model using nlme: model2-lme(log(malrat1)~I(year-1982),random=~1|Continent/Country,data=wbmal10) I'm trying to run a Poisson GlMM to avoid the above transformation but I don't know how to specify the model using lmer in the lme4 library:

[R] random interactions in lme

Hi All, I'm taking an Experimental Design course this semester, and have spent many long hours trying to coax the professor's SAS examples into something that will work in R (I'd prefer that the things I learn not be tied to a license). It's been a long semester in that regard. One thing that

RE: [R] missing values

Hello, The mice package http://web.inter.nl.net/users/S.van.Buuren/mi/hmtl/mice.htm is also potentially interesting. It works with R 1.9 but not always with newer versions. Best regards, Bruno Bruno Falissard Département

Re: [R] random interactions in lme

Jacob Michaelson wrote: Hi All, I'm taking an Experimental Design course this semester, and have spent many long hours trying to coax the professor's SAS examples into something that will work in R (I'd prefer that the things I learn not be tied to a license). It's been a long semester in that

RV: [R] dr ()

According to the algorithm, what is divided by the number of slices is the range of the response variable such that each slice has approximately the same number of cases. Maybe the range of your response is very short or only takes a small number of values. I did a small simulation with

[R] Advice on Speed Improvement

Hi folks! Somehow I still write crappy code which is awefully slow. Maybe as a case study, could anybody give me a hint on how to improve the following code for speed? d is a 360x500 matrix. Basically, each group of 5 columns represent a run. For each run I aggregate some columns, find which

Re: [R] [R-pkgs] Biodem 0.1/orphaning of MAlmig

On 24 April 2005 at 15:14, Federico Calboli wrote: [...] | Finally, Biodem has been build on a Debian Linux box and is therefore | not yet available for Windows/OS X; Biodem was built with R 2.0.1 | because I am using Debian 'testing' and the new R 2.1.0 is not yet | available for 'testing'. I

[R] large dataset import, aggregation and reshape

Dear useRs We have a data-set (comma delimited) with 12Millions of rows, and 5 columns (in fact many more, but we need only 4 of them): id, factor 'a' (5 levels), factor 'b' (15 levels), date-stamp, numeric measurement. We run R on suse-linux 9.1 with 2GB RAM, (and a 3.5GB swap file). on

[R] installing R-2.1.0 from source on Fedora Core 3 with tcltk

I installed from source on Fedora Core 3 starting with the command ./configure --prefix=/usr --with-tcltk (The --with-tcltk may not be necessary, but there seems to be some correlation between using it and getting it to work.) It would not compile with tcltk, even though I had both tcl and tk

Re: [R] [R-pkgs] Biodem 0.1/orphaning of MAlmig

On Sun, 2005-04-24 at 12:55 -0500, Dirk Eddelbuettel wrote: Actually, most of the time the dependency structure between Debian unstable and testing is such that the packages from unstable can be installed straight through into testing. Look at the apt-get HOWTO for the details on pinning which

Re: [R] Bootstrap / permutation textbooks

look at: AC Davison, DV Hinkley: Bootstrap Methods and Their Applications there is also a R-library 'boot', based on methods reported in this book C Peter Soros wrote: Dear R experts, I would like to explore if and to what extent bootstrapping and permutation statistics can help me for my

Re: [R] random interactions in lme

On Apr 24, 2005, at 8:52 AM, Douglas Bates wrote: Jacob Michaelson wrote: Hi All, I'm taking an Experimental Design course this semester, and have spent many long hours trying to coax the professor's SAS examples into something that will work in R (I'd prefer that the things I learn not be tied

Re: [R] installing R-2.1.0 from source on Fedora Core 3 with tcltk

I haven't had a problem building R 2.1.0 on FC3 and I've got the tcl, tcl-devl, tk, and tk-devel rpms installed (and I don't use the --with-tcltk configure switch). I've never downloaded the R_Tcl.zip file. Does 'configure' find the tcl/tk setup and then it fails to compile or does

Re: [R] installing R-2.1.0 from source on Fedora Core 3 with tcltk

On 04/24/05 17:07, Roger D. Peng wrote: I haven't had a problem building R 2.1.0 on FC3 and I've got the tcl, tcl-devl, tk, and tk-devel rpms installed (and I don't use the --with-tcltk configure switch). I've never downloaded the R_Tcl.zip file. Probably you're right. I just installed it

Re: [R] large dataset import, aggregation and reshape

Christoph Lehmann a écrit : Dear useRs We have a data-set (comma delimited) with 12Millions of rows, and 5 columns (in fact many more, but we need only 4 of them): id, factor 'a' (5 levels), factor 'b' (15 levels), date-stamp, numeric measurement. We run R on suse-linux 9.1 with 2GB RAM, (and a

[R] Re: [R-sig-Debian] Upgrading R

On 24 April 2005 at 14:45, Gorjanc Gregor wrote: | I suppose Debian packages of base R are updated accordingly to R patches, | aren't they? No, I tend to follow R Core and make release when actual minor release are made. On the other hand, I try to help with alpha and beta releases during the

RE: [R] installing R-2.1.0 from source on Fedora Core 3 with tclt k

On my FC3 for x86_64 (Athlon64 3000+) at home, R-patched from today compiled just fine, and tcltk works. The version of tcl, tcl-devel, tk and tk-devel are all 8.4.7-2. Cheers, Andy From: Jonathan Baron I installed from source on Fedora Core 3 starting with the command ./configure

Re: [R] Restarting R without quitting R

You could try rm( list=ls() ) # to remove all objects in a session gc() # may return from R to operating system but sometimes I find it just easier to kill and start a new R session. Regards, Adai On Sat, 2005-04-23 at 15:26 +0100, Paul Smith wrote: Dear All Is there

[R] residuals in lmer

Does anyone know how to extract residuals in lmer? Here's the error I get: crop.lme=lmer(response~variety*irrigation*pesticide+(1|rep)+(1|rep: pesticide)+(1|rep:pesticide:irrigation), crop.data) qqnorm(crop.lme) Error in qqnorm.default(crop.lme) : y is empty or has only NAs resid(crop.lme)

[R] Off topic excel question

Does anyone know how to plot a time series in Excel, please? Sorry for the Bad off topic. thanks, Laura Holt mailto: [EMAIL PROTECTED] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide!