Re: [R] Turning off return warning messages.

On Wed, 20 Jul 2005, Steve Su wrote: > Is there a way I can turn off the following warning message > for using multi-argument returns? > > multi-argument returns are deprecated in: return(p1, p2, p3, p4) doubleEm <- function(p1, p2, p3, p4) { return(list(p1 = p1*p1, p2 = p2*p2

Re: [R] SJava linux installation problems

On Fri, 5 Aug 2005, Dhiren DSouza wrote: > I am extremely new to linux so bare with the questions. I am > trying to install the SJava package for R on linux (debian). > > I issue the R CMD INSTALL SJava_0.68-0.tar.gz and get the > following error > > Cannot find Java. > Please set your path to in

Re: [R] how to use the function from another package

On Tue, 9 Aug 2005, Peter Yang wrote: > I am trying to write a package(A) for myself and need to use a > function from another package(B) which is in R already(need to install > it before use). Could anyone tell me how to implement that? Also I > hope that my package gives an ERROR message(somethi

Re: [R] question on creating a new logical variable

On Thu, 11 Aug 2005, Renuka Sane wrote: > I have two variables. > A <- rep(c(1:9), 2) > B <- rep(c(2:10),2) > > I want to know the the value for > A==1 and B==1 > > [SNIP] > > To solve the problem I therefore create a new variable > C <- c(A, B) > and then do table(C==1) which gives me > FALSE TRU

Re: [R] signal handling

On Thu, 11 Aug 2005, Omar Lakkis wrote: > Is ther[sic] a signal handling model in R? similar to > Perl's %SIG hash. I want to do fast clean up in my R > code before exit when a kill signal is issued. You may find on.exit() somewhat useful for cleanup but signals are not propogated to your code by

Re: [R] Dating Objects

On Fri, 12 Aug 2005, Jason Skelton wrote: > I'm trying to carryout the equivalent of ls -l in R > to give some date/time label to each of my objects > > If the case is that there is no equivalent, is it > possible to list all objects in an environment that > share a common component so that the co

Re: [R] signal handling

On Fri, 12 Aug 2005, Paul Gilbert wrote: > Omar Lakkis wrote: > > > Is ther a signal handling model in R? similar to Perl's > > %SIG hash. I want to do fast clean up in my R code before > > exit when a kill signal is issued. > > I'm not sure about perl's signals, but Unix signals can be > passed w

Re: [R] Compilation failures: mgcv, spatstat, Matrix, cluster

On Sat, 13 Aug 2005, Michael Kubovy wrote: > With Version 2.1.1 (2005-06-20) on Power Mac G5 running Mac OS X > 10.4.2 (8C46): > > Some compilations work (e.g., MatchIt, RGraphics, Zelig), and some > don't, e.g., mgcv, spatstat, and the following (Matrix, cluster): > > trying URL 'http://www.ibi

Re: [R] make check errors for R-2.3.1

On Thu, 8 Jun 2006, Luo Weijun wrote: > I tried to build R-2.3.1 from source under Mac OS X > 10.4.6. (I am doing so because only this way I can get > the 64-bit version of R) > > The configure and make steps look fine. But I got > errors when I did make check-all, here is the message: > > running

[R] default help system (was Re: Basic package structure question)

<<>> On Fri, 23 Jun 2006, Duncan Murdoch wrote: > >> On Fri, 23 Jun 2006, Joerg van den Hoff wrote: > >> > >>> our Windows machines lack proper development environments (mainly > >>> missing perl is the problem for pure R-code packages, I believe?) and we > >>> bypass this (for pure R-code packag

Re: [R] Use of contains in S4 classes

On Thu, 18 Aug 2005, Ross Boylan wrote: > setClass("B", representation=representation("B", extra="numeric)) > setClass("B", representation=representation(extra="numeric"), > contains="B") > Are these the same? If not, how do they differ? > > What about > setClass("B", representation=represe

[R] X-Axis Label Overwritten By TickMark Values

Can someone tell me how to fix the left margin of plot region such that the tick values don't overwrite the x-axis label? I haven't been able to set the correct par option to fix this... TIA grdev <- function(...) { get(getOption("device"))(...) } plotFixMe <- function(spectrum,

Re: [R] Y-Axis Label Overwritten By TickMark Values

On Sat, 1 Oct 2005, Marc Schwartz wrote: > On Sat, 2005-10-01 at 06:07 -0500, Paul Roebuck wrote: > > > Can someone tell me how to fix the left margin of plot region > > such that the tick values don't overwrite the x-axis label? > > I haven't been able to set

Re: [R] Library error when using R CMD check

On Mon, 3 Oct 2005, Ken Termiso wrote: > I've got a library I'm trying to build, and am having an error on R CMD > check... > > The source is fine, and the script runs OK, but during the script test > execution it downloads a library from an online repository, which goes fine > and it says that in

[R] sscanf equivalent

I have a data file from which I need to read portions of data but data location/quantity can change from file to file. I wrote some code and have a working solution but it seems wasteful to have to do it this way. Here's the contrived incomplete code. datalines <- readLines(datafile.pathname)

Re: [R] sscanf equivalent

On Fri, 7 Oct 2005, Prof Brian Ripley wrote: > On Fri, 7 Oct 2005, Paul Roebuck wrote: > > > I have a data file from which I need to read portions of > > data but data location/quantity can change from file to file. > > I wrote some code and have a working solution but

Re: [R] R.app window size

On Mon, 10 Oct 2005, Jason Horn wrote: > This is a question for any of you who use R.app (OS X). Is there any > way to resize the quartz plot window from within R? I know that you > can resize the window by dragging the corner of the window, and fro > the preferences panel. But is there a way t

Re: [R] Problems with dyn.load()

On Tue, 1 Nov 2005, Marcelo Damasceno wrote: > Is there some function that returns the directory where > the libraries of the instaled package are? Because in > Mandrake, R installs in /usr/lib/R/library/pack/libs, and in > Debian it installs in /usr/local/lib/R/library/pack/libs. ?system.file -

Re: [R] Tcl/tk [for Mac OS X]

On Tue, 1 Nov 2005, Sokol Haxhinasto wrote: > I recently installed the R (the most recent) and Bioconductor on my > computer. > I installed the packages in "affy", the affyGui and the limmaGui on my > computer and they all appear in the Load Package window. > After trying to load the affyGui or th

[R] sibling list element reference during list definition

Can the value of a list element be referenced from a sibling list element during list creation without the use of a temporary variable? The following doesn't work but it's the general idea. > list(value = 2, plusplus = $value+1) such that the following would be the output from str() List of 2

Re: [R] How to run R in batch mode

On Fri, 18 Nov 2005, Beatriz wrote: > I want to run R in batch mode but it doen't work (Error: syntax error) > > I've found this in R help: > R CMD BATCH [options] infile [outfile] > > I have tried differents commands: > (I have been working in the same directory I have "test.txt" file and > "test

Re: [R] How to run R in batch mode

On Fri, 18 Nov 2005, Beatriz wrote: > Paul Roebuck wrote: > > >On Fri, 18 Nov 2005, Beatriz wrote: > > > >>I want to run R in batch mode but it doen't work (Error: syntax error) > >> > >>[SNIP] > >> > >>I don't know what

Re: [R] Fwd: Matrix rotation

On Thu, 24 Nov 2005, Benjamin Lloyd-Hughes wrote: > Ok I warned you that I'd been drinking! What I really meant was > something to go from: > > [,1] [,2] > [1,]12 > [2,]43 > > to > > [,1] [,2] > [1,]41 > [2,]32 > > to > > [,1] [,2] > [1,]34

Re: [R] suppress tick labels

On Thu, 1 Dec 2005, Sebastian Leuzinger wrote: > is R able to suppress tick labels (not tick marks)? i > know there is a way around this with axes=F and then > draw new axes, but it would be easier to suppress them > in the first place. Something wrong with setting them to null string? > plot(rn

[R] Makeconf on Windows - where?

Read in the Windows release notes for 2.4.0 that: There is a new file etc/Makeconf that provides an approximation to the Unix version and may help with src/Makefile's. Yet when I look at the CRAN binary I have for 2.4.1patched, there are five files in the $R_HOME/etc directory, but no Makec

Re: [R] quartz() on MAC OSX

On Tue, 22 May 2007, hadley wickham wrote: > On 5/22/07, Rolf Turner <[EMAIL PROTECTED]> wrote: > > > On 22/5/07 6:48 AM, "hadley wickham" <[EMAIL PROTECTED]> wrote: > > > > > Two possible solutions: > > > > > > * DISPLAY=0.0.0.0:0 R - and then X11() should work without having to use > > > xterm

[R] R Commenting Style

I seem to remember reading somewhere about some style guide regarding R the number of comment characters (#) prior to the comment meaning something. Anyone know to what I'm referring? Where? -- SIGSIG -- signature too long (core dumped) ___

[R] [REQ] Equivalent INSTALL cmdline option

Would R-Core entertain adding the more proper (-L) option as an equivalent to the existing (-l) option for INSTALL script so it would match other utilities (like cc) for specifying directories? $ R CMD INSTALL -L -- SIGSIG -- signature too

Re: [R] Problem with scoping a variable value

On Thu, 16 Feb 2006, Tolga Uzuner wrote: > I have a function which has a variable called show as an input: > > richardson.grad <- function(func, x, d=0.01, eps=1e-4, r=6, show=F){ > # do some things >if(show) { > > cat("\n","first order approximations", "\n") > print(a.mtr, 12)

Re: [R] how to clear screen in R-console?

On Thu, 16 Feb 2006, Henrik Bengtsson wrote: > On 2/16/06, Michael <[EMAIL PROTECTED]> wrote: > > > On 2/16/06, Christian Schulz <[EMAIL PROTECTED]> wrote: > > > > > > >How to clear the screen in R-console? > > > > > > ctrl - e & l > > > > Any funcation that is callable from my program, instead of

[R] Recall for parent

What's the best way to simulate Recall for parent function? Consider this one-time recursive code: alwaysEven <- function(x) { handleOdd <- function(x) { alwaysEven(x-1)# use Recall-like here } return(if (x %% 2) handleOdd(x) else x) } any2even <- alwaysEven rm(alwaysEven)

Re: [R] Branching, depending upon operating system

On Fri, 31 Mar 2006, Frank Rossdeutscher wrote: > From my current code, I need to call either a batch > file or shell script, depending on what operating system > R is running. But before that I need to find out, whether > the machine is running Windows or Linux. I found the > "getBuiltinOs()" com

[R] Reset R's temporary directory automatically

I have run into this several times now. I leave a copy of R running for days at a time. At some point in time, the temporary directory R uses no longer exists. Once that happens, installs (and other basic operations) stop functioning. Currently I recreate the directory manually by failing some basi

[R] Disable LazyLoading mechanism completely

Is there a global option somewhere that can completely disable the LazyLoad option? I want all my packages in source format for searching purposes, crippled by the conversion to database format. -- SIGSIG -- signature too long (core dumped)

Re: [R] Disable LazyLoading mechanism completely

On Fri, 31 Mar 2006, Duncan Murdoch wrote: > On 3/31/2006 5:15 PM, Paul Roebuck wrote: > > Is there a global option somewhere that can completely > > disable the LazyLoad option? I want all my packages > > in source format for searching purposes, crippled by > > the co

Re: [R] Disable LazyLoading mechanism completely

On Sat, 1 Apr 2006, Prof Brian Ripley wrote: > On Fri, 31 Mar 2006, Dirk Eddelbuettel wrote: > > > On 31 March 2006 at 16:15, Paul Roebuck wrote: > > | Is there a global option somewhere that can completely > > | disable the LazyLoad option? I want all my packages &g

Re: [R] Disable LazyLoading mechanism completely

On Sat, 1 Apr 2006, Duncan Murdoch wrote: > On 3/31/2006 6:03 PM, Paul Roebuck wrote: > > On Fri, 31 Mar 2006, Duncan Murdoch wrote: > > > >> On 3/31/2006 5:15 PM, Paul Roebuck wrote: > >>> Is there a global option somewhere that can completely > >>

[R] do.call method within namespace

How does one go about invoking a method within a namespaced package if that package has not been loaded via library method? Given "mypackage" and method "foo" within: mypackage::foo(1, 2, 3) Executing the same method's function call: do.call("foo", list(1, 2, 3)) didn't work. Nor did the

[R] Indexing With List Of Vectors (Replacement)

I have the following: > a <- matrix(1:10, nrow = 2, byrow = TRUE) > b <- array(as.integer(0), c(7, 5)) > idx <- list() > length(idx) <- 2 > dim(idx) <- c(1, 2) > idx[[1]] <- as.integer(1:2) > idx[[2]] <- as.integer(1:5) I can do the following, which works if 'b' is a matrix. > b[idx[[1]], idx[[2

[R] S4 method dispatch matrixOrArray

I have some code where the primary dispatching is on other parameters so I'd like not to have to create a set of functions for "matrix" and another duplicate set for "array". But the class union technique isn't working as implemented below and I don't have my Green book with me. How do I fix my inf

Re: [R] S4 method dispatch matrixOrArray

On Wed, 12 Apr 2006, Gabor Grothendieck wrote: > On 4/12/06, Paul Roebuck <[EMAIL PROTECTED]> wrote: > > > I have some code where the primary dispatching is on > > other parameters so I'd like not to have to create a > > set of functions for "matrix" a

Re: [R] extremely simple "for loop" question

On Wed, 12 Apr 2006, Brian Quinif wrote: > I want to do a for loop in which m takes on the values > 1, 5, 10, 15, 20. What is the syntax for doing that? > > I had been doing a loop for m in 1:20, but I only want > those values above. ?seq

[R] Breakdown a number

Isn't there a builtin method for doing this and, if so, what is it called? breakdown <- function(whole) { breaks <- c(250, 800) pieces <- integer(length(breaks) + 1) if (whole > breaks[2]) { pieces[3] <- whole - breaks[2]

Re: [R] Breakdown a number

On Wed, 19 Apr 2006, Gabor Grothendieck wrote: > On 4/19/06, Paul Roebuck <[EMAIL PROTECTED]> wrote: > > > Isn't there a builtin method for doing this and, if so, > > what is it called? > > > >breakdown <- function(whole) { > >

Re: [R] Breakdown a number

On Thu, 20 Apr 2006, Gabor Grothendieck wrote: > On 4/19/06, Paul Roebuck <[EMAIL PROTECTED]> wrote: > > On Wed, 19 Apr 2006, Gabor Grothendieck wrote: > > > > > On 4/19/06, Paul Roebuck <[EMAIL PROTECTED]> wrote: > > > > > > > Isn't

Re: [R] Memory usage and limit

On Wed, 26 Apr 2006, Min Shao wrote: > I recently made a 64-bit build of R-2.2.1 under Solaris 9 using gcc v.3.4.2. > The server has 12GB memory, 6 Sparc CPUs and plenty of swap space. I was the > only user at the time of the following experiment. > > I wanted to benchmark R's capability to read l

[R] sprintf question

How would one go about getting sprintf to use the values of a vector without having to specify each argument individually? > v <- c(1, 2, -1.197114, 0.1596687) > iv <- c(3, 1, 2, 4) > sprintf("%9.2f\t%d\t%d\t%8.3f", v[3], v[1], v[2], v[4]) [1] "-1.20\t1\t2\t 0.160" Essentially, desired effe

Re: [R] Automate concatenation?

On Tue, 30 May 2006, Robert Lundqvist wrote: > I have this typical problem of joining a number of vectors with similar > names - a1, a2,..., a10 - which should be concatenated into one. Using > c(a1,a2,a3,a4,a5,a6,a,a8,a9,a10) naturally works, but I would like to do > it with less manual input. My

Re: [R] X11 device

On Wed, 31 May 2006, Marius Hofert wrote: > I am working with R on a Mac Powerbook G4. As described a couple of > days ago, I would like to create an animation consisting of - say - > 1000 plots (lattice: xyplot, wireframe etc.). Everything works > perfectly fine (thanks to all of you for the sugg

[R] Canonical method for S engine selection?

Assuming script 'common.q' contains code that needed different processing depending on interpreter (either S-PLUS or R), what should the condition be? if () { # Do S-PLUS code } else { # Do R code } Looking for something akin to the C preprocessor directive USING_R, but for S. --

[R] [Q] GET_DIM() crash on Windows only

I have the following contrived code in package format. On Solaris and Mac OS X, code runs just fine. On Windows, it crashes the R environment with the "Send Bug Report" dialog. I tried R 1.8.1 (Win2K) and R 1.9 (WinXP) binaries with the same result. PCs otherwise appear properly configured for crea

Re: [R] [Q] GET_DIM() crash on Windows only

On Wed, 23 Jun 2004, Uwe Ligges wrote: > Paul Roebuck wrote: > > > I have the following contrived code in package format. > > On Solaris and Mac OS X, code runs just fine. On Windows, > > it crashes the R environment with the "Send Bug Report" > > dialog.

Re: [R] Perl--R interface

On Wed, 23 Jun 2004, XIAO LIU wrote: > My R is 1.8.1 in Linux. How can I call R in Perl process? > And call Perl from R? > This is only one direction but worth a look as an alternative. --

Re: [R] assigning from multiple return values

On Wed, 23 Jun 2004, Jack Tanner wrote: > I know that if I have a function that returns multiple values, I should > do return(list(foo, bar)). But what do I do on the recieving end? > > fn <- function(x) { >return(list(foo, bar)) > } > > I know that at this point I could say > > values.list <-

[R] [SOLVED] GET_DIM() crash on Windows only

Paul Roebuck wrote: >I have the following contrived code in package format. >On Solaris and Mac OS X, code runs just fine. On Windows, >it crashes the R environment with the "Send Bug Report" >dialog. I tried R 1.8.1 (Win2K) and R 1.9 (WinXP) binaries >with the same res

Re: [R] R via ssh login on OS X?

On Mon, 28 Jun 2004, James Howison wrote: > I have an ssh only login to a G5 on which I am hoping to run some > analyses. The situation is complicated by the fact that the computer's > owner is away for the summer (and thus also only has shell login). > > R is installed and there is a symlink to

Re: [R] MacOS X binaries won't install

On Tue, 29 Jun 2004, Ruben Solis wrote: > I've tried installing the MacOS X binaries for R available at: > > http://www.bioconductor.org/CRAN/ > > I'm running MacOS X version 10.2.8. > > I get a message indicating the installation is successful, but when I > double-click on the R icon that shows u

Re: [R] R BATCH problem

On Thu, 1 Jul 2004, Andreas Pauling wrote: > Entering > > rows<-as.matrix(c(4,8,12,16,20,24,28,32,36,40,44,48,52,56,60,64,68,72,76,80,84,88,92,96,100,104,108,112,116,120,124,128,132,136,140,144,148,152,156,160,164,168,172,176,180,184,188,192,196,200,204,208,212,216,220,224,228,232,236,240,244,248,

[R] contrib.url binary paths inconsistent

Binary distribution [Windows] - > contrib.url(getOption("CRAN")) [1] "http://cran.r-project.org/bin/windows/contrib/1.9"; Binary distribution [Mac OS X] - > contrib.url(getOption("CRAN"), type = "mac.binary") [1] "http://cran.r-project.org/bi

[R] Enumeration in R

I want the equivalent of this 'C' declaration. enum StoplightColor { green = 3, yellow = 5, red = 7 }; This mostly works except the validity checking doesn't seem to occur automatically. What didn't I do to enable it? setClass("stoplightColor", representat

Re: [R] Enumeration in R

On Tue, 7 Jul 2004, Peter Dalgaard wrote: > Paul Roebuck <[EMAIL PROTECTED]> writes: > > > I want the equivalent of this 'C' declaration. > > enum StoplightColor { > > green = 3, > > yellow = 5, > > red = 7 >

Re: [R] Win32 & C code

On Wed, 7 Jul 2004, Simon Cullen wrote: > I'm trying to get C code working with R. This is my first time writing C > on Windows and I'm making a mess of it. Help! > ... > I seem to be unable to make Windows pay attention to additions to the PATH > variable so I stuck the code (test.c) into the $R_

[R] NAMESPACE and tests for unexported functions

How do you get around the problem of having tests for functions that are not exported in NAMESPACE? It seems rather self-defeating to have to export everything so that 'R CMD CHECK pkg' won't crash when it encounters a test case for an internal function. I don't want someone using the package to ca

Re: [R] Statistics::R

On Thu, 8 Jul 2004, michael watson (IAH-C) wrote: > I am looking (possibly in vain!) for the Author of the Statistics::R > perl package - I believe he announced the package on this mailing list > some months ago. The name is Graciliano Monteiro Passos, and his e-mail > address, [EMAIL PROTECTED],

.Platform addition (was Re: [R] where does R search when source()?)

On Sun, 11 Jul 2004, Gabor Grothendieck wrote: > search.path <- > function(fn, > paths = strsplit(Sys.getenv("PATH"), split = ";")[[1]], > fsep = "\\") { > for(d in paths) { > f <- file.path(d, fn, fsep = fsep) > if (file.exists(f)) > return(f) >

[R] Re: .Platform addition

On Mon, 12 Jul 2004, Duncan Murdoch wrote: > On Mon, 12 Jul 2004 11:01:49 -0500 (CDT), Paul Roebuck > <[EMAIL PROTECTED]> wrote : > > >I glanced this and thought this might be handy to keep for > >possible use. To make it less Windows-specific, I was going > >to r

RE: [R] Functions in a package not visible to a user

On Thu, 15 Jul 2004, Andy Liaw wrote: > Rui Dantas wrote: > > > I have a package with several R functions. Some are internal auxiliary > > functions, and should not be available to the user (nor do they, for > > example, need "user" documentation). How can I hide them? > > That's one of the purpos

[R] [Q] Apply Function Over Multiple Array Margins

Is there a canonical means to apply a function over multiple arrays simultaneously? For example, if I wanted to plot each line with a different color? Or is a for loop conversion my best option? x <- seq(0, 8, by = 2) y <- matrix(1:15, nrow = 5, byrow = TRUE) my.colors <- heat.colors(3) drawLine

Re: [R] 64 bit benefit for dual G5 powermac

On Fri, 3 Sep 2004, Sek Won Kong,M.D wrote: > Can dual G5 Powermac have benefit of 64 bit in terms of memory and maximum > matrix size? I have read several positive postings on 64 bit machine. > If yes, what will be configure looked like other than { ./configure > --with-blas='-framework vecLib' -

Re: [R] Dyn.load of sharing object with GSL library

On Thu, 9 Sep 2004, Vicky Landsman wrote: > Following the recommendation of Prof. Ripley, I have created the Makevars > file with the line: > PKG_LIBS="-L/usr/lib/libm -lm -L/usr/local/lib/libgsl -lgsl -L/usr/local/lib > /libgslcblas -lgslcblas" > in the working directory. That should probably lo

[R] Splitting vector into individual elements

Is there a means to split a vector into its individual elements without going the brute-force route for arguments to a predefined function call? offred.rgb <- c(1, 0, 0) * 0.60; ## Brute force style offred.col <- rgb(offred.rgb[1], offred.rgb[2],

Re: [R] Splitting vector into individual elements

On Wed, 15 Sep 2004, Peter Dalgaard wrote: > Paul Roebuck <[EMAIL PROTECTED]> writes: > > > Is there a means to split a vector into its individual > > elements without going the brute-force route for arguments > > to a predefined function call? > > >

[R] Confused about specifying plot colors as RGB values

Based on reading 'rgb' documentation, I would have thought the following would have produced identical results. Can someone explain how to make this happen? I need to be able to specify an array of rgb values for the 'col' parameter. colnames.col <- c("black", "red", "blue", "green") colnames.rgb

Re: [R] Using R to send to SOAP server?

On Fri, 17 Sep 2004, Don MacQueen wrote: > I have an R process continuously monitoring a data stream. When the > data meet certain criteria, I need to send a message to a SOAP server. > > Currently I'm doing this by making a system() call to execute a perl > script, passing the message as an argum

[R] S4 method selection based on second argument

I'm translating some Matlab code and need some help figuring out how to change this call into an S4 generic method. In matlab, there's a function called 'repmat' with three calling sequences (all I have to deal with anyway): 1) B = repmat(A, m, n) 2) B = repmat(A, [m n]) 3) B = repmat(

Re: [R] Warning: number of items to replace is not a multiple ofreplacement length

On Wed, 29 Sep 2004, Mag. Ferri Leberl wrote: > What does this warning mean precisely? Usually means there isn't enough room to store your results. > Is there any reason to care about it? You probably should. > Can I Avoid it by another way of programming? Yes you can. Had you provided an exa

[R] Mac OS X binary package naming convention

Did the convention change during the R 2.0.0 Cocoa update? When I issue the build command: $ R CMD build --binary mypkg I expected to get 'mypkg_0.9-0.tgz' but instead got 'mypkg_0.9-0_R_powerpc-apple-darwin6.8.tar.gz'. Or should I rename it manually? platformpowerpc-apple-darwin6.8 arc

Re: [R] Compilation error on mgcv_1.1-7 on OS X (10.3)

On Mon, 1 Nov 2004, Jon Egil Strand wrote: > I run into a compilation error when updating to mgcv_1.1-7 in R 2.0.0 on > OS X 10.3. Note that other pacakges have compiled nicely. > > Some details are given below, but in short it looks like it's seeking for > > /usr/local/lib/powerpc-apple-dar

[R] Rd \docType options

Where would I find a list of valid options for \docType{}? I found the following types using grep: - class - data - genericFunction - methods Are there others? -- SIGSIG -- signature too long (core dumped) ___

[R] Need car() and cdr() for '...'

Needed to redefine function "sum" for my MATLAB package. There's something similar in Chambers's Green Book (pg 351) so I modified it as such: library(methods) setGeneric("sum", function(x, ..., na.rm = FALSE) { if (nDotArgs(...) > 0) sum(c(sum(x, na.rm = na.rm), sum(...,

Re: [R] can i copy the graphics to openoffice?

On Fri, 12 Nov 2004, ronggui wrote: > under windows,i can plot a graphics in windows() device and then copy it to > ms-office.but it under linux,can i do similar things? > i want to use plot() to draw a graphic in X11() so i can have a look to make > sure if that's what i want,if so,i then want to

Re: [R] R package installation

On Wed, 17 Nov 2004, Timothy D. Johnson wrote: > I was given an excerpt with your problem about installing package on > a MAC, such as Hmisc. > > I had the same problems and found a work around. > > I have not had any trouble loading in source packages since, include > Hmisc and Design, acepack an

Re: [R] Redirect standard input and output of R

On Wed, 17 Nov 2004, Victor Robles wrote: > I'm trying to write a C program that write to the standard input of R > and read the standard output. I can perfectly read the R output, but > I'm not able of writing anything to R. > [SNIP C code] Several years ago, I wrote some software that used S-pl

Re: [R] setGeneric(rm)

On Fri, 3 Dec 2004, Marcos Carrero wrote: > We are developing a package using S4 classes. The S4 classes are > wrappers to C++ classes. So S4 classes contain an integer that is the > memory address of one C++ object. If an user calls the rm() function, > the C++ object must be deleted. But our gen

Re: [R] Text Mining with R

On Fri, 3 Dec 2004, Jose Quesada wrote: > On Fri, 3 Dec 2004 19:15:57 +, Tobias Verbeke wrote: > > > You may have a look at: > > > > http://wwwpeople.unil.ch/jean-pierre.mueller/ > > I just created a zip file from the tar, and used the "install from > zip" option of the Rwin console. > > ttda

[R] install.packages() for local source file

Wish to install a local source package on Un*x platform from within R. Same thing as I can accomplish from cmdline as $ export R_LIBS=~/R/library $ cd /path/to/pkg $ R CMD INSTALL -l $R_LIBS So, how do you go about this anyway? And isn't this a bug in 'install.packages'? --- $ R R : Copyr

RE: [R] install.packages() for local source file

On Sat, 1 Jan 2005, Liaw, Andy wrote: > > From: Paul Roebuck > > > > Wish to install a local source package on Un*x platform from > > within R. Same thing as I can accomplish from cmdline as > > > > $ export R_LIBS=~/R/library > > $ cd /path/to/pkg >

RE: [R] install.packages() for local source file

On Sat, 1 Jan 2005, Liaw, Andy wrote: > > From: Paul Roebuck > > > > > Please read ?install.packages. It's most definitely not a bug for a > > > function that works as documented. If you want, you might take the > > > source for install.packages and

Re: [R] install.packages() for local source file

On Sat, 1 Jan 2005, Roger D. Peng wrote: > Paul Roebuck wrote: > > Wish to install a local source package on Un*x platform from > > within R. Same thing as I can accomplish from cmdline as > > > > $ export R_LIBS=~/R/library > > $ cd /path/to/pkg > > $ R

RE: [R] help wanted using R in a classroom

On Tue, 18 Jan 2005, bogdan romocea wrote: > It appears you wouldn't get much improvement at all even if the 2nd CPU > were used at 100%. Five R sessions can easily overwhelm one CPU. I > think you need (a lot) more CPUs than 2 to solve your problem. > > Possible solutions: > 1. Install R on each

Re: [R] signif() generic

On Wed, 19 Jan 2005 [EMAIL PROTECTED] wrote: > I'm trying to write a class for Gaussian error propagation of measured > values and their (estimated) errors, > > > setClass("sec", representation(val="numeric", err="numeric")) > > I've already successfully implemented basic arithmetics using mostly

Re: [R] an R script editor for Mac

Jacques VESLOT wrote: > Could someone please make me know if there is a nice script editor available > under Mac, similar to Crimson, that offers R syntax highlighting (and pairs > of parentheses underlining) ? Did you look into BareBone's TextWrangler, 'BBEdit Lite' replacement? It's now availab

Re: [R] Error: cannot allocate vector of size... but with a twist

On Fri, 28 Jan 2005, James Muller wrote: > I have a memory problem, one which I've seen pop up in the list a few > times, but which seems to be a little different. It is the Error: cannot > allocate vector of size x problem. I'm running R2.0 on RH9. > > [SNIP] > > R chews up memory up until the 3.

[R] [Q] R equivalent for Splus get.message()

I'm trying to get a translation of some Splus code going. My problem is with the S-plus get.message() function not existing in R. Is there a replacement or alternative? ErrorHandler.func<-function() { cat("app.terminated\n"); cat(paste("err.fatal",get.message(),"\n",sep="")); dump.call

Re: [R] Rinternals.h and iostream don't play nice together'

On Sun, 30 Jan 2005, Faheem Mitha wrote: > Consider the following file. > > *** > foo.cc > *** > #include and if you use the following instead of "Rinternals.h"? extern "C" { #include } > #include > #include > **

Re: [R] Startup Files (RProfile) and R-Aqua

On Sun, 30 Jan 2005, Thomas Hopper wrote: > I'm having some difficulty understanding the documentation relative to > the startup files with R-Aqua 2.0.1 for Mac OS X. > > Specifically, I'm wondering: where does R search for the startup files > (my home directory at Users::?); how should they be na

Re: [R] type of list elements in .Call

On Mon, 31 Jan 2005, Faheem Mitha wrote: > [SNIP] > as I would expect. I thought that if the vectors in the list could be > regarded as integer vectors, they would be, but apparently not. Is there > any way I can tell R to regard them as integer vectors? .Call("printlst", list(as.integer(c(1,2)),

[R] Re: [Rd] Typo in 'R Language Definition'

On Mon, 31 Jan 2005, Prof Brian Ripley wrote: > On Sun, 30 Jan 2005, Paul Roebuck wrote: > > > Section 3.5.3 The call stack (pg 23 of R-lang.pdf) > > ...the computation the the currently active environment... > > ^^^ > > Which version of R is this?

Re: [R] Uninstalling R from Mac OS X

On Thu, 3 Feb 2005, Christofer Ecklund wrote: > Could you tell me how to uninstall R from Mac OS X (10.3)? I am not > too familiar with terminal or the command line so a GUI removal would > be better, however I would like to remove every trace of the program > from my system. Usually with a pack

Re: [R] Rmatlab

On Mon, 7 Feb 2005, David Enot wrote: > I came across recently to the Rmatlab package > (http://www.omegahat.org/RMatlab/) that allows R and Matlab > to "talk" to each other. I made several attempts to install > it on my Mac but without any success as some headers seem > to miss. I am just wonderi

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