[R] Recurrence plots for CGH

2007-08-22 Thread Richard Yanicky
I Have been trying to create a recurrence plot for multiple copy number alterations. Many of the articles I read have the plots but don't reference how they are created. Almost all the articles use R to analyze the data so I assume they use R to create the plots? I do find the plots mentioned

Re: [R] Recurrence plots for CGH

2007-08-22 Thread Ido M. Tamir
CGH Hi, I guess you should start looking at the bioconductor project. http://www.bioconductor.org/packages/release/Software.html best wishes, ido __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] residual plots for lmer in lme4 package

2007-08-18 Thread Gregor Gorjanc
John Maindonald john.maindonald at anu.edu.au writes: ... The issue of checking for normality of effects in multi-level models has not been very much researched, as far as I can tell. The function residuals() gives residuals that adjust for all except the highest level of random effects.

Re: [R] several plots on several pages - bug in par(mfg())?

2007-08-18 Thread ONKELINX, Thierry
Rainer M. Krug Verzonden: vrijdag 17 augustus 2007 9:49 Aan: Greg Snow CC: r-help; [EMAIL PROTECTED] Onderwerp: Re: [R] several plots on several pages - bug in par(mfg())? Greg Snow wrote: Oops, I read further down in your original post and see that you already knew about par(mfg=c(2,1

[R] residual plots for lmer in lme4 package

2007-08-17 Thread Margaret Gardiner-Garden
Hi, I was wondering if I might be able to ask some advice about doing residual plots for the lmer function in the lme4 package. (Apologies to anyone who has received this message twice. I have had problems with embedded text.) Our group's aim is to find if the expression staining of a

Re: [R] for plots

2007-08-17 Thread Dieter Menne
jim holtman jholtman at gmail.com writes: Turn 'Recording on for the plots. windows(record=TRUE) or select from the GUI. I mean if the object has several plots how can I get those? gam.object - gam(y ~ s(x,6) + z,data=gam.data) plot(gam.object,se=TRUE) Or use something like

Re: [R] several plots on several pages - bug in par(mfg())?

2007-08-17 Thread Rainer M. Krug
Greg Snow wrote: Oops, I read further down in your original post and see that you already knew about par(mfg=c(2,1)). To get it to advance to page 2 for the 4th plot try calling plot.new() which should move you to the next page, then doing par(mfg=c(1,1)) should cause the next graph to be at

Re: [R] for plots

2007-08-17 Thread S Ellison
?plot.gam or ?preplot.gam says there is an ask= option, slightly bizarrely set to F by default. If ask=T, You'll get a menu of options for plotting. In windows, hitting Esc will get you out of the menu. example: gam(Kyphosis ~ s(Age,4) + Number, family = binomial, data=kyphosis, trace=TRUE)

Re: [R] residual plots for lmer in lme4 package

2007-08-17 Thread John Maindonald
, at 8:00 PM, [EMAIL PROTECTED] wrote: From: Martin Henry H. Stevens [EMAIL PROTECTED] Date: 17 August 2007 12:08:15 AM To: Margaret Gardiner-Garden [EMAIL PROTECTED] Cc: [EMAIL PROTECTED] [EMAIL PROTECTED] Subject: Re: [R] residual plots for lmer in lme4 package Hi Margaret, Have a look

Re: [R] for plots

2007-08-17 Thread Julian M Burgos
Hi Jim, You could also use the 'select' argument. For example, plot(gam.object,se=TRUE,select=1) will give you the smooth plot for the first variable. Be sure to read the documentation. See ?plot.gam for specifics details on plotting gam objects. Julian On Fri, 17 Aug 2007, Dieter Menne

Re: [R] several plots on several pages - bug in par(mfg())?

2007-08-17 Thread Francisco J. Zagmutt
Hello Rainer, You need to catch the cases where the call to plot generates an error. Using your example: ## Set layout to three rows and only one column par( mfcol=c(3,1), oma=c(0,0,0,0), mar=c(4, 4, 2, 2) ) ## First row par(mfg=c(1,1)) er-try( plot(runif(ff)), silent=T ) ## plot fails due to

[R] residual plots for lmer in lme4 package

2007-08-16 Thread Margaret Gardiner-Garden
Hi, I was wondering if I might be able to ask some advice about doing residual plots for the lmer function in the lme4 package. Our group's aim is to find if the expression staining of a particular gene in a sample (or core) is related to the pathology of the core. To do this, we used

[R] several plots on several pages

2007-08-16 Thread Rainer M. Krug
Hi version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2 minor 5.1 year 2007 month 06 day27 svn rev42083 language R version.string R

Re: [R] several plots on several pages

2007-08-16 Thread ONKELINX, Thierry
conducted, is a delicate dissection of uncertainties, a surgery of suppositions. ~M.J.Moroney -Oorspronkelijk bericht- Van: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Namens Rainer M. Krug Verzonden: donderdag 16 augustus 2007 14:58 Aan: r-help Onderwerp: [R] several plots

Re: [R] several plots on several pages

2007-08-16 Thread Rainer M. Krug
] Namens Rainer M. Krug Verzonden: donderdag 16 augustus 2007 14:58 Aan: r-help Onderwerp: [R] several plots on several pages Hi version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2

Re: [R] residual plots for lmer in lme4 package

2007-08-16 Thread Martin Henry H. Stevens
Hi Margaret, Have a look at qqmath in the lattice package. ?qqmath Hank On Aug 16, 2007, at 2:45 AM, Margaret Gardiner-Garden wrote: Hi, I was wondering if I might be able to ask some advice about doing residual plots for the lmer function in the lme4 package. Our group's aim is to

Re: [R] several plots on several pages

2007-08-16 Thread Greg Snow
- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Rainer M. Krug Sent: Thursday, August 16, 2007 6:58 AM To: r-help Subject: [R] several plots on several pages Hi version _ platform i686-pc-linux-gnu arch i686 os linux

Re: [R] several plots on several pages

2007-08-16 Thread Greg Snow
: [R] several plots on several pages Hi version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2 minor 5.1 year 2007 month 06 day27 svn rev

[R] for plots

2007-08-16 Thread Brad Zhang
Hi, All, I am a beginner for R. Now I have installed R 2.5.1 in Window environment. After I run a program such as gam I would like to display a plot for the object. The following is an example. When I did this, only the last plot was presented on my screen. How can I get a plot before the last

Re: [R] for plots

2007-08-16 Thread jim holtman
Turn 'Recording on for the plots. windows(record=TRUE) or select from the GUI. On 8/17/07, Brad Zhang [EMAIL PROTECTED] wrote: Hi, All, I am a beginner for R. Now I have installed R 2.5.1 in Window environment. After I run a program such as gam I would like to display a plot for the

[R] labelling plots with ancillary data in data.frame

2007-08-14 Thread Wesley Roberts
Hi All, I am busy using R to do some regression modelling and have been using plot(x,y,) to visualise my variables. I would now like to label my points using data stored in the data.frame used for the regression analysis. For example each of my data points is made up of a field measured forest

Re: [R] labelling plots with ancillary data in data.frame

2007-08-14 Thread Paul Hiemstra
Hi Wesley, Try the text() function. An example: a = rep(10,10) b = seq(1,10) plot(a,b) text(a,b, labels = b, pos = 4, offset = 0.7) ?text hth, Paul Wesley Roberts schreef: Hi All, I am busy using R to do some regression modelling and have been using plot(x,y,) to visualise my variables.

Re: [R] labelling plots with ancillary data in data.frame

2007-08-14 Thread Julian Burgos
Hi Wesley, You can use the text() function to add text to an existing plot. See ?text. Julian Wesley Roberts wrote: Hi All, I am busy using R to do some regression modelling and have been using plot(x,y,) to visualise my variables. I would now like to label my points using data

Re: [R] two plots super-impose

2007-08-03 Thread Greg Snow
: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of [EMAIL PROTECTED] Sent: Thursday, August 02, 2007 12:07 PM To: R-help@stat.math.ethz.ch Subject: [R] two plots super-impose Dear R users, I used plot(x,y) to draw a scatter plot. I need to add another smaller histogram

Re: [R] two plots super-impose

2007-08-02 Thread Sébastien
Hi Philip, par(new=TRUE) before your hist(y) lines should do the trick. You may have to modify some settings in case the axes are not overlayed perfectly. Sebastien [EMAIL PROTECTED] a écrit : Dear R users, I used plot(x,y) to draw a scatter plot. I need to add another smaller histogram

[R] two plots super-impose

2007-08-02 Thread Philip.He
Dear R users, I used plot(x,y) to draw a scatter plot. I need to add another smaller histogram on the same plot I just had. However when I used hist(y), the histogram was on another page. Any suggestion? Best Regards, Philip [[alternative HTML version deleted]]

[R] Odp: plots

2007-07-25 Thread Petr PIKAL
Hi [EMAIL PROTECTED] napsal dne 25.07.2007 12:17:54: Hi Sir I did not find any function of graph which plot one variable on x-axis and 2 or more than 2 variables on y-axis. ?matplot or you can do plot(x,y, ylim=range(all.your.y), type=n) and add lines/points by lines(x, one.of.your.y)

[R] multiple plots in a graph

2007-07-12 Thread Ajay Singh
Hi, I have to generate 10 cdfs in a graph. I need to compare the cdf's nature by plotting ten cdfs in a graph. Thus, I need multiple plots in a graph. I would appreciate if you could give some solution to the problem asap. Thanking you, Sincerely, Ajay. -- Ajay Singh Research Scientist,

Re: [R] multiple plots in a graph

2007-07-12 Thread Uwe Ligges
Ajay Singh wrote: Hi, I have to generate 10 cdfs in a graph. I need to compare the cdf's nature by plotting ten cdfs in a graph. Thus, I need multiple plots in a graph. I would appreciate if you could give some solution to the problem asap. plot(ecdf(rnorm(10)))

Re: [R] abline plots at wrong abscissae after boxplot

2007-06-22 Thread S Ellison
Boxplot positions and labels are not the same thing. You have groups 'called' 2, 3, 4. As factors - which is what bocplot will turn them into - they will be treated as arbitrary labels and _numbered_ 1:3 (try as.numeric(factor(x)). So your lm() used 2:4, but your plot (and abline) uses 1:3

[R] abline plots at wrong abscissae after boxplot

2007-06-21 Thread Brian Wilfley
Hi folks, I'm using R 2.5.0 under ESS under Windows XP. (This also happens using the Rgui application.) I'm trying to add lines to a plot originally made with boxplot, but the lines appear in the wrong place. Below is a script that illustrates the problem # boxablinetest.R - script to show

Re: [R] abline plots at wrong abscissae after boxplot

2007-06-21 Thread Sundar Dorai-Raj
Brian Wilfley said the following on 6/21/2007 2:44 PM: Hi folks, I'm using R 2.5.0 under ESS under Windows XP. (This also happens using the Rgui application.) I'm trying to add lines to a plot originally made with boxplot, but the lines appear in the wrong place. Below is a script that

[R] Accessing plots in Trellis graphics

2007-05-31 Thread Sigbert Klinke
Hi, I used xyplot to create conditional scatterplots. My layout is 5x3 plots, but my data contains only 14 subgroups. So I would like to use the empty plot to display additional information about the data. How can I access the plot? Thanks in advance Sigbert --- Here my call:

Re: [R] Accessing plots in Trellis graphics

2007-05-31 Thread Vladimir Eremeev
I used similar empty space to place the legend, by specifying the placement coordinates to the key argument of xyplot. This was rather long time ago, and I had to explicitly form the list, used as the key argument for this function. Lattice has evolved since that, some automation has appeared.

Re: [R] Accessing plots in Trellis graphics

2007-05-31 Thread Deepayan Sarkar
On 5/31/07, Vladimir Eremeev [EMAIL PROTECTED] wrote: I used similar empty space to place the legend, by specifying the placement coordinates to the key argument of xyplot. This was rather long time ago, and I had to explicitly form the list, used as the key argument for this function.

[R] lattice plots: filled points in the key

2007-05-27 Thread Renaud Lancelot
I wonder why the following code does not produce filled points in the key, as I would have expected: library(lattice) x - 1:10 y - rnorm(10) xyplot(y ~ x, pch = 21, col = black, fill = grey, +key = list(space = top, + text = list(data), + points =

[R] lattice plots: examples with argument legend

2007-05-27 Thread Renaud Lancelot
Would anybody kindly provide me with examples of code using the argument legend in lattice plots (package lattice), in particular for use inside the plot region ? Thanks in advance, Renaud -- Renaud LANCELOT Département Systèmes Biologiques du CIRAD CIRAD, Biological Systems Department Campus

Re: [R] lattice plots: filled points in the key

2007-05-27 Thread Deepayan Sarkar
On 5/27/07, Renaud Lancelot [EMAIL PROTECTED] wrote: I wonder why the following code does not produce filled points in the key, as I would have expected: library(lattice) x - 1:10 y - rnorm(10) xyplot(y ~ x, pch = 21, col = black, fill = grey, +key = list(space = top, +

Re: [R] Interactive plots?

2007-05-26 Thread mister_bluesman
Hi Tony. I've downloaded the RSVGTipsDevice library and copied some of the examples in the pdf and I dont seem to be able to get any tooltips appear when I hover over the objects. For example, I used the following example: devSVGTips(C:\\svgplot2.svg, toolTipMode=2, title=SVG example plot 2:

Re: [R] Interactive plots?

2007-05-26 Thread Duncan Murdoch
On 26/05/2007 8:45 AM, mister_bluesman wrote: Hi Tony. I've downloaded the RSVGTipsDevice library and copied some of the examples in the pdf and I dont seem to be able to get any tooltips appear when I hover over the objects. For example, I used the following example:

Re: [R] Interactive plots?

2007-05-26 Thread mister_bluesman
The jpeg was just the picture showing you firfox and the svg file loaded into it. Duncan Murdoch-2 wrote: On 26/05/2007 8:45 AM, mister_bluesman wrote: Hi Tony. I've downloaded the RSVGTipsDevice library and copied some of the examples in the pdf and I dont seem to be able to get any

[R] 3D plots with data.frame

2007-05-25 Thread H. Paul Benton
Dear all, Thank you for any help. I have a data.frame and would like to plot it in 3D. I have tried wireframe() and cloud(), I got scatterplot3d(xs) Error: could not find function scatterplot3d wireframe(xs) Error in wireframe(xs) : no applicable method for wireframe persp(x=x, y=y,

[R] Interactive plots?

2007-05-25 Thread mister_bluesman
Hi there. I have a matrix that provides place names and the distances between them: Chelt Exeter London Birm Chelt 0 118 96 50 Exeter 1180 118 163 London 96 118 0 118 Birm 50 163 118 0 After performing

Re: [R] Interactive plots?

2007-05-25 Thread Tony Plate
The package RSVGTipsDevice allows you to do just it just -- you create a plot in an SVG file that can be viewed in a browser like FireFox, and the points (or shapes) in that plot can have pop-up tooltips. -- Tony Plate mister_bluesman wrote: Hi there. I have a matrix that provides place

Re: [R] 3D plots with data.frame

2007-05-25 Thread J . delasHeras
You could try the function 'plot3d', in package 'rgl': library(rgl) ?plot3d x-data.frame(a=rnorm(100),b=rnorm(100),c=rnorm(100)) plot3d(x$a,x$b,x$c) Jose Quoting H. Paul Benton [EMAIL PROTECTED]: Dear all, Thank you for any help. I have a data.frame and would like to plot it in 3D.

[R] Graphic plots in pdf (position)

2007-04-26 Thread Felix Wave
Hello, I have got three graphics. pdf(output.pdf) persp(zPERSP_1) persp(zPERSP_2) persp(zPERSP_3) dev.off() I will write all those on one page of a pdf file. On the left side I will write some lines text. Is this possible, positioning graphic and text elements in pdf? I has already thought I

Re: [R] Graphic plots in pdf (position)

2007-04-26 Thread Stefan Grosse
you can place the figures with print command, e.g. pdf(output.pdf) print(text or textplot,position=c(0,0,.5,.5),more=T) print(persp(zPERSP_1),position=c(.5,0,1,0),more=T) print(persp(zPERSP_2),position=c(0,0.5,0.5,1),more=T) print(persp(zPERSP_3),position=c(.5,.5,1,1)) dev.off() pdf has options

[R] interaction plots and confidence levels

2007-04-02 Thread Max Manfrin
Dear list, for an ANOVA analysis I would like to obtain the interaction plots that contains also the confidence intervals (95% Tukey HSD). My anova model is built in a way similar to this: myObj.aov - aov(response~(factor1+factor2+factor2+factor4+factor5) ^2,data=myDataFrame) To obtain

[R] GLMM plots

2007-03-13 Thread Cristina Gomes
Hi R-users, I would like to plot the effects of one of the predictor variables on the response variable in the GLMM I ran with the lme4 package. Usually when doing a multivariate analysis I would obtain the residuals of the model without the predictor variable of interest (x1) and then plot

[R] Interactive plots with R

2007-01-31 Thread Andris Jankevics
Hi, I wrote some simple rpanel package script for visual spectral data comparison. At this example i have a three samples and i want to zoom through x and y axis to compare differences between samples. With my script below I can zoom to some data region and add some other spetra to the plot,

[R] Multiple plots via sapply or lapply?

2007-01-07 Thread Antje
Hi all, I've got the following problem. I have a vector containing file names. I want to read these files as csv and calculate the density-function for each file (has just one column with data). Then, I'd like to plot all density functions into one window. I did the following to calculate the

Re: [R] Multiple plots via sapply or lapply?

2007-01-07 Thread talepanda
try apply() : par(new=F); apply(s,2,function(x){plot(x[[1]],x[[2]],type=o);par(new=T)}) On 1/8/07, Antje [EMAIL PROTECTED] wrote: Hi all, I've got the following problem. I have a vector containing file names. I want to read these files as csv and calculate the density-function for each file

Re: [R] stacked plots

2006-12-27 Thread Gabor Grothendieck
If this is time series data try library(zoo) example(plot.zoo) example(xyplot.zoo) to see if any of those fit your requirements. On 12/27/06, BBands [EMAIL PROTECTED] wrote: Dear helpeRs, Is there a better method of producing stacked charts than par(mfrow(3,1)), plot(x), plot(y), plot(z)?

Re: [R] stacked plots

2006-12-27 Thread Dirk Eddelbuettel
John, On 27 December 2006 at 08:36, BBands wrote: | Dear helpeRs, | | Is there a better method of producing stacked charts than | par(mfrow(3,1)), plot(x), plot(y), plot(z)? What I would like to do is | produce a chart of several panes stacked vertically with no space | between them so they

Re: [R] stacked plots

2006-12-27 Thread BBands
On 12/27/06, Dirk Eddelbuettel [EMAIL PROTECTED] wrote: Do you remember the bollingerBands example we worked on a few years ago and that is still at Romain's incredible R Graph Gallery at http://addictedtor.free.fr/graphiques/RGraphGallery.php?graph=65 It uses layout, you can also use

Re: [R] stacked plots

2006-12-27 Thread ahmad ajakh
posts today on how to label them. good luck AA. - Original Message From: BBands [EMAIL PROTECTED] To: R-Help r-help@stat.math.ethz.ch Sent: Wednesday, December 27, 2006 11:36:00 AM Subject: [R] stacked plots Dear helpeRs, Is there a better method of producing stacked charts than par

[R] Survfit plots in trellis graphics

2006-12-09 Thread Marco Chiarandini
Dear all, is there a way to produce survfit plots in a trellis environment? I am trying this: print(Ecdf(~time | size*type, groups=alg,data=B,subscripts=TRUE, panel=function(x,groups,subscripts) { t -

[R] lattice plots - variables in columns

2006-12-04 Thread Matt Pocernich
I an using xyplot in lattice. I have data in a dataframe. Some columns contains data, each from a different group. Is there a direct way to specify a range of column names as a grouping variables? Currently, I am stacking the data and creating a column with names. Thanks, Matt -- Matt

Re: [R] lattice plots - variables in columns

2006-12-04 Thread Sundar Dorai-Raj
Matt Pocernich said the following on 12/4/2006 12:32 PM: I an using xyplot in lattice. I have data in a dataframe. Some columns contains data, each from a different group. Is there a direct way to specify a range of column names as a grouping variables? Currently, I am stacking the data

[R] Lattice plots of the form xyplot(y1+y2~x)

2006-11-17 Thread Ross Darnell
I would appreciate help trying to set different plot types in a lattice plot with multiple responses e.g. xyplot(y+fval~x) but have y as points and fval as a line. I have tried xyplot(y+fval~x,type=c(p,l)) but this results in both plots having both types. Thanks Ross Darnell University of

Re: [R] Lattice plots of the form xyplot(y1+y2~x)

2006-11-17 Thread Gabor Grothendieck
Use distribute.type = TRUE or panel = panel.superpose.2. as an argument to xyuplot. e.g. Using the builtin anscombe data set: xyplot(y1 + y2 ~ x1, anscombe, type = c(p, l), distribute.type = TRUE) # same xyplot(y1 + y2 ~ x1, anscombe, type = c(p, l), panel = panel.superpose.2) On

Re: [R] Dotmatrix Plots

2006-11-16 Thread Prof Brian Ripley
PROTECTED] On Behalf Of Peter Dalgaard Sent: Wednesday, November 15, 2006 5:58 PM To: Jeffrey Robert Spies Cc: r-help Subject: Re: [R] Dotmatrix Plots Jeffrey Robert Spies [EMAIL PROTECTED] writes: Hi all, Does anyone know what happened to the dna library or the dotmatrix function? For the life

Re: [R] Dotmatrix Plots

2006-11-16 Thread Jean lobry
Jeff, Does anyone know what happened to the dna library or the dotmatrix function? For the life of me, I can't find it anywhere with the exception of this reference: http://rss.acs.unt.edu/Rdoc/library/dna/html/dotmatrix.html Thanks! Jeff. you may also have a look at the

Re: [R] Dotmatrix Plots

2006-11-16 Thread Marwan Khawaja
-- -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Prof Brian Ripley Sent: Thursday, November 16, 2006 11:53 AM To: Marwan Khawaja Cc: 'r-help'; 'Peter Dalgaard' Subject: Re: [R] Dotmatrix Plots The details

[R] Dotmatrix Plots

2006-11-15 Thread Jeffrey Robert Spies
Hi all, Does anyone know what happened to the dna library or the dotmatrix function? For the life of me, I can't find it anywhere with the exception of this reference: http://rss.acs.unt.edu/Rdoc/library/dna/html/dotmatrix.html Thanks! Jeff. http://www.nd.edu/~jspies/

Re: [R] Dotmatrix Plots

2006-11-15 Thread Peter Dalgaard
Jeffrey Robert Spies [EMAIL PROTECTED] writes: Hi all, Does anyone know what happened to the dna library or the dotmatrix function? For the life of me, I can't find it anywhere with the exception of this reference: http://rss.acs.unt.edu/Rdoc/library/dna/html/dotmatrix.html

Re: [R] Dotmatrix Plots

2006-11-15 Thread Marwan Khawaja
-Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Peter Dalgaard Sent: Wednesday, November 15, 2006 5:58 PM To: Jeffrey Robert Spies Cc: r-help Subject: Re: [R] Dotmatrix Plots Jeffrey Robert Spies [EMAIL PROTECTED] writes: Hi all, Does

Re: [R] multiple plots in the same graph

2006-11-04 Thread Jeff Miller
Li, What type of plot? A profile plot would be interaction.plot(factor1,factor2,y) Jeff -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Li Zhang Sent: Friday, November 03, 2006 9:55 PM To: R-help@stat.math.ethz.ch Subject: [R] multiple plots

[R] multiple plots in the same graph

2006-11-03 Thread Li Zhang
I'd like to plot y vs x according to the third variable group which has three levels. I am wondering how can I put the three plots in one graph? Thank you (http://groups.yahoo.com)

Re: [R] multiple plots in the same graph

2006-11-03 Thread Christos Hatzis
See ?points and ?lines for adding new groups of points or lines to an existing graph created by plot. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Li Zhang Sent: Friday, November 03, 2006 9:55 PM To: R-help@stat.math.ethz.ch Subject: [R] multiple

[R] Cube plots

2006-10-23 Thread Robert Kinley
Hi does anyone know of any R functions or packages for the following :- . generating cube plots for displaying the results from a response surface experiment design . generating ternary plots from a mixture design . tetrahedral plot or quaternary plot for displaying results from a four

Re: [R] Cube plots

2006-10-23 Thread Duncan Murdoch
On 10/23/2006 7:17 AM, Robert Kinley wrote: Hi does anyone know of any R functions or packages for the following :- . generating cube plots for displaying the results from a response surface experiment design . generating ternary plots from a mixture design . tetrahedral plot or

Re: [R] Cube plots

2006-10-23 Thread hadley wickham
I don't think I've see tetrahedral plots, but the strategy above might turn them up. There was a userR presentation on them - http://www.r-project.org/useR-2006/Abstracts/Matthews.pdf With a little work, you could also do them in GGobi (http://www.ggobi.org), which would generalise to more

Re: [R] complex plots using layout()

2006-10-04 Thread Paul Murrell
Subject: Re: [R] complex plots using layout() Hi Lu, Jiang Jane wrote: Dear r-help, I am trying to plot several scatter plots with marginal histograms on one page. Ideally, a page is equally divided into 4 figure regions. Within each figure region, a scatter plot with marginal histograms

Re: [R] complex plots using layout()

2006-10-03 Thread Paul Murrell
Hi Lu, Jiang Jane wrote: Dear r-help, I am trying to plot several scatter plots with marginal histograms on one page. Ideally, a page is equally divided into 4 figure regions. Within each figure region, a scatter plot with marginal histograms will be plotted. I followed Dr. Paul

Re: [R] complex plots using layout()

2006-09-29 Thread Uwe Ligges
Lu, Jiang Jane wrote: Dear r-help, I am trying to plot several scatter plots with marginal histograms on one page. Ideally, a page is equally divided into 4 figure regions. Within each figure region, a scatter plot with marginal histograms will be plotted. I followed Dr. Paul Murrell's

[R] complex plots using layout()

2006-09-28 Thread Lu, Jiang Jane
Dear r-help, I am trying to plot several scatter plots with marginal histograms on one page. Ideally, a page is equally divided into 4 figure regions. Within each figure region, a scatter plot with marginal histograms will be plotted. I followed Dr. Paul Murrell's code released online to

[R] density plots????

2006-09-06 Thread Luis Barreiro
Dear all, I arrive to do density plots using the function kde2d , and from this do a countour plot. My problem is that I do not really understand what the labels for the different levels mean??? What I would like to obtain is a surface encompassing the 95 percentile of my values. In other

[R] Time plots

2006-08-28 Thread H. Paul Benton
Hello all and thank you, I will try to make this as clear as I can. I have a matrix, at the top of the matrix are 4 time points, the first col describes the sample, then under each time point I have the intensity values of that sample. So : Samples 0 10 30 120 - time A

[R] Time plots

2006-08-28 Thread H. Paul Benton
Hello all and thank you, I will try to make this as clear as I can. I have a matrix, at the top of the matrix are 4 time points, the first col describes the sample, then under each time point I have the intensity values of that sample. So : Samples 0 10 30 120 - time A

[R] Time plots

2006-08-28 Thread H. Paul Benton
Hello all and thank you, I will try to make this as clear as I can. I have a matrix, at the top of the matrix are 4 time points, the first col describes the sample, then under each time point I have the intensity values of that sample. So : Samples 0 10 30 120 - time A

[R] Time plots

2006-08-28 Thread H. Paul Benton
Hello all and thank you, I will try to make this as clear as I can. I have a matrix, at the top of the matrix are 4 time points, the first col describes the sample, then under each time point I have the intensity values of that sample. So : Samples 0 10 30 120 - time A

[R] Time plots

2006-08-28 Thread H. Paul Benton
Hello all and thank you, I will try to make this as clear as I can. I have a matrix, at the top of the matrix are 4 time points, the first col describes the sample, then under each time point I have the intensity values of that sample. So : Samples 0 10 30 120 - time A

[R] Time plots

2006-08-28 Thread H. Paul Benton
Hello all and thank you, I will try to make this as clear as I can. I have a matrix, at the top of the matrix are 4 time points, the first col describes the sample, then under each time point I have the intensity values of that sample. So : Samples 0 10 30 120 - time A

[R] Time plots

2006-08-28 Thread H. Paul Benton
Hello all and thank you, I will try to make this as clear as I can. I have a matrix, at the top of the matrix are 4 time points, the first col describes the sample, then under each time point I have the intensity values of that sample. So : Samples 0 10 30 120 - time A

Re: [R] Time plots

2006-08-28 Thread Spencer Graves
Dear Paul: 1. The Internet moves NOT at the speed of light but at the speed of store and forward. 2. Have you worked the examples with the matplot help page? 3. Have you worked through the 'zoo' vignette ? (If no, please see

Re: [R] Time plots

2006-08-28 Thread H. Paul Benton
Message- From: jim holtman [mailto:[EMAIL PROTECTED] Sent: Monday, August 28, 2006 4:02 PM To: H. Paul Benton Subject: Re: [R] Time plots You need to show the commands that you were using to generate your plot. What do you want the plot to look like? What is the intensity value supposed

Re: [R] Time plots

2006-08-28 Thread H. Paul Benton
Scripps   \   o Research   / o Institute -Original Message- From: Spencer Graves [mailto:[EMAIL PROTECTED] Sent: Monday, August 28, 2006 4:31 PM To: H. Paul Benton Cc: r-help@stat.math.ethz.ch Subject: Re: [R] Time plots Dear Paul: 1. The Internet moves NOT at the speed of light

[R] More Plots

2006-08-08 Thread sonal
Hi, How can we plot two graphs ex. lets say correlation ratio in the same window? I mean in the window I have : 1. Graph of correlation having X Y axes 2. Graph of ratio having A B axes one above the other. Thanks, Sonal __

Re: [R] More Plots

2006-08-08 Thread tristan rouyer
[EMAIL PROTECTED] a écrit : Hi, How can we plot two graphs ex. lets say correlation ratio in the same window? I mean in the window I have : 1. Graph of correlation having X Y axes 2. Graph of ratio having A B axes one above the other. Thanks, Sonal

Re: [R] More Plots

2006-08-08 Thread John Kane
--- [EMAIL PROTECTED] wrote: Hi, How can we plot two graphs ex. lets say correlation ratio in the same window? I mean in the window I have : 1. Graph of correlation having X Y axes 2. Graph of ratio having A B axes one above the other. Thanks, Sonal ?par and have a

Re: [R] More Plots

2006-08-08 Thread hadley wickham
How can we plot two graphs ex. lets say correlation ratio in the same window? I mean in the window I have : 1. Graph of correlation having X Y axes 2. Graph of ratio having A B axes one above the other. Why do you want to do this? It is not a good idea unless you are trying to

Re: [R] CFD Plots in R and Other Things

2006-07-17 Thread vincent
Lorenzo Isella a écrit : Tipically, these sets of data are plotted in 2D with r and z as axis and the velocity field represented by using colours explained by a legenda. Can R do anything like this? ?image hih __ R-help@stat.math.ethz.ch mailing

[R] CFD Plots in R and Other Things

2006-07-16 Thread Lorenzo Isella
Dear All, I am getting some data from fluid dynamics simulations (air mixing in a pipe, 2D axial symmetry, geometry described by a radial coordinate r and an axial coordinate z) which I'd like to plot and analyze with R. Think about slicing the cylinder along its axial direction to get a set of

Re: [R] CFD Plots in R and Other Things

2006-07-16 Thread Gabor Grothendieck
Look at ?image, ?contour and in the lattice package ?contourplot, ?levelplot, ?wireframe, ?cloud and in scatterplot3d package scatterplot3d. Try example() on each one, e.g. example(image), to get an idea if its what you want. Also google for the R Graph Gallery and look through the charts there.

[R] Problem with Statistics::R Save plots

2006-05-25 Thread Filipe Garrett
Hi all, I've recently tried to use the perl module Statistics::R-0.02. I'm using R v2.2.1 and Perl 5.8.7 on WinXP and Linux. When I use the R GUI or Rterm I have no problem in plotting and saving all the graphics or data. For example: /*pdf(file.pdf) x - c(1,3,-3,1,233,112,6,9,12) boxplot(x)

Re: [R] multiple plots with par mfg

2006-05-24 Thread Yan Wong
On 23 May 2006, at 21:47, Romain Francois wrote: Hi, An other possibility might be to use two devices and use dev.set to go from one to another : Thanks. Actually I did try that, but there are quite a lot of points to plot, and the switching between plots slowed the whole simulation

[R] Problem with Statistics::R Save plots

2006-05-24 Thread Filipe Garrett
__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

[R] multiple plots with par mfg

2006-05-23 Thread Yan Wong
Hi, I'm trying to add points to 2 plots on the fly using par(mfg=vector) so switch between them. However, the appropriate scales aren't switched when changing from one plot to another, e.g. par(mfcol=c(2,1)) plot(1,1, col=blue)# blue plot plot(1.2,1.2, col=red) # red plot

Re: [R] multiple plots with par mfg

2006-05-23 Thread Prof Brian Ripley
On Tue, 23 May 2006, Yan Wong wrote: Hi, I'm trying to add points to 2 plots on the fly using par(mfg=vector) so switch between them. However, the appropriate scales aren't switched when changing from one plot to another, e.g. par(mfcol=c(2,1)) plot(1,1, col=blue)# blue plot

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