l and quite prominent case, to hear any views from CRAN folk as to
whether everybody dependent on cpp11 will have to wait for resolution
before they'll be able to resubmit? Alternatively, any indication from
anybody in a position to opine on cpp11 status and future maintenance
p
You'll need to fix that note before resubmitting. If you can share a
link to a public repository, people in this list will likely be able to
help.
regards, Mark
On 11/8/23 17:54, Karolina Marek wrote:
Hello,
I have the following case. I would like to resubmit a package to the Cran -
per
On 21/08/2023 14:34, Dirk Eddelbuettel wrote:
On 21 August 2023 at 15:16, Ivan Krylov wrote:
| On Mon, 21 Aug 2023 12:02:55 +0100
| Scott Ritchie wrote:
|
| > remotes::install_github("sritchie73/ukbnmr")
| > library(ukbnmr)
| > system.time({ remove_technical_variation(test_data) })
|
| data.ta
On 14/08/2023 14:43, Dirk Eddelbuettel wrote:
On 14 August 2023 at 11:51, Mark Padgham wrote:
| An update of a package of mine got immediately kicked off CRAN because
| an externally-bundled file which had not been changed for years, and
| which included "pragma clang system_heade
s actually better than nullptr the way the code is constructed. The
rest are - currently - unimportant deprecation warnings, all of one
specific class.)
Thanks,
Mark
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Returning to the original question, if it's helpful: I'd like to know what
constraints led to considering an export only available on Windows, and see
if we can suggest some other designs. It'd be good to keep the user's
mental model abstracted from the platform they're working on. There are
often
on the value of that environment variable. This is
what tinytest does under the hood.
Best,
Mark
On Wed, Apr 21, 2021 at 7:17 AM Ott Toomet wrote:
> Hi packagers,
>
> what is the best way to skip certain tests on CRAN? So far I have included
> certain test files in .Rbuildignore
ase advise.
Thanks,
Mark Hogue
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interactively or in their own scripts and applications. I
will modify the DESCRIPTION file accordingly.
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com
> On Mar 24, 2021, a
ld be listed within the DESCRIPTION file.
Help will be appreciated.
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com
__
R-package-devel@r-projec
to refer to the columns
without the $.
On Fri, Dec 11, 2020 at 11:13 AM Tiago Olivoto
wrote:
> Thanks, everyone,
>
> Following Mark suggestion:
>
> The problem I'm trying to solve is:
> Users of my package metan (https://CRAN.R-project.org/package=metan),
> sometimes n
I think it would be helpful to describe more deeply what you're trying to
do by this. There's a fair chance there's a better way to do what you're
trying to do.
Mark
On Fri, Dec 11, 2020 at 10:53 AM Tiago Olivoto
wrote:
> Thank Matt for your response.
> Would be an ac
ons to use C++11 for
older versions of R?
Moreover, as a principle, should a package need to change the Makevars
and DESCRIPTION files to suit the most recent updates of their
dependencies? I would have thought that such a need would break many
packages.
Sincerely, Mark.
När du skickar e-post till
authors to make sure that their package works as it should and to avoid
re-introducing bugs (regressions).
Best,
Mark
On Thu, Jul 16, 2020 at 3:28 PM Richel Bilderbeek <
ric...@richelbilderbeek.nl> wrote:
> Dear R package developers,
>
> I would enjoy some help regarding som
Hi Duncan: I maintain dynlm and your example is the exact reason I've been
getting emails from people regarding
it not working correctly. I've been telling them to load dplyr by using
library(dplyr, exclude = c("filter", "lag"))
On Mon, Jun 22, 2020 at 7:57 PM Duncan Murdoch
wrote:
> On 22/
defending their position and disagree with it. However, it is their
position based on what I think is a conservative or overly cautious legal
interpretation. I am not a lawyer, however, so my opinions are of no import.
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
I strongly prefer. The GPL-2
and GPL-3 licenses are apparently sufficiently ambiguous in the legal community
that some companies avoid them.
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh
the following:
person("Terry", "Therneau", role = c("aut”))
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com
> Begin forwarded message:
>
> Fro
an Rd file that
is to have the example.
I cannot think of a meaningful example for a function that creates the content
of a new Shiny tabpanel when an error is detected.
Suggestions are eagerly sought.
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow
I think you want file.path(). you can use that to make a directory that
includes a path to it.
See ?file.path for more details. Then, you can do something like
mydir ,- file.path(whatever)1, whatever2).
setwd(mydir)
but mydir needs to exist before you do that so check existence first using
file.
mistake.
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com
> On Dec 18, 2019, at 7:26 PM, Mauricio Zambrano-Bigiarini
> wrote:
>
> Thank you very much Duncan for the
xes on the
confirmation page) the package will be staged for build and check at CRAN.
Once your package passes this stage, it is released on CRAN. After that it
takes some days before your package has been built and checked at the
different architectures listed on the CRAN check results page.
HTH,
Mark
O
Submission
Date: Tue, Dec 17, 2019 at 5:55 PM
Subject: CRAN submission radsafer 2.1.0
To: Mark Hogue
Dear Mark Hogue
Someone has submitted the package radsafer to CRAN.
You are receiving this email to confirm the submission as the maintainer of
this package.
To confirm the submission to CRAN, follow
".", args = c('--no-manual',
'--compact-vignettes="gs+qpdf"'); devtools::test(); quit(save = "no", status =
if (length(c(r$errors, r$warnings)) > 0) { 1 } else { 0 }, runLast = FALSE)'
I have tried the following build arguments in RStu
not available for package ‘nprcmanager’
The following platforms have no errors or warnings and have only the “New
submission” note.
Windows Server 2008 R2 SP1, R-devel, 32/64 bit
Fedora Linux, R-devel, clang, gfortran
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
75
Adding a static PDF vignette is very easy. I have written about it here:
http://www.markvanderloo.eu/yaRb/2019/01/11/add-a-static-pdf-vignette-to-an-r-package/
Best,
Mark
Op vr 25 okt. 2019 13:22 schreef Berry Boessenkool <
berryboessenk...@hotmail.com>:
>
> You could also consi
d release)
## R CMD check results
0 errors | 0 warnings | 1 note
* This is a new release.
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com
> On Oct 5, 2019, at 5:10 PM, Roy Mendelssohn - NOAA
elease)
checking CRAN incoming feasibility ... NOTE
Maintainer: 'R. Mark Sharp '
New submission
License components with restrictions and base license permitting such:
MIT + file LICENSE
File 'LICENSE':
Copyright 2017-2019 R. Mark Sharp
Permission is hereby g
} anywhere, I will at initial
submission already use the 'Optional Comment' box to document why each
\dontrun{} is necessary. Based on my earlier experiences, this seems
reasonable and also the fastest way to publication.
Best,
Mark
On Wed, Oct 2, 2019 at 5:31 AM Hong Ooi via R-pa
m not really
favoring it, but I can see cases where this may be useful (e.g. I use a
static vignette in one pkg to include a published paper).
-Mark
On Fri, Aug 30, 2019 at 5:00 PM Michael Dewey
wrote:
> Comments in-line
>
> On 30/08/2019 14:59, Iñaki Ucar wrote:
> > On Fri, 30 Au
as simply `char * getenv
("MY_FILE_PATH");`.
4. Insert `MY_FILE_PATH` macro for every desired reference to locally
packaged file.
Works perfectly! Thanks again,
mark
On 19/06/2019 17:46, Martin Morgan wrote:
Section 1.2 of 'Writing R Extensions' says
Another example is w
ystem.file() function?
On June 19, 2019 5:45:51 AM CDT, mark padgham wrote:
Dear All,
I'm developing a package which primarily relies on C code that itself
has to call an external text file representing a dictionary or lookup
table. The location of this file is defined in a C macro, the file
its
**must** be
linked directly from the compiled object, not at run time. This means
that no R-based solutions can be implemented, and so the problem can
only be solved in this case through figuring out how to direct a
compiled object to connect to an additional pac
privately sent
CRAN emails on GH, including personal details such as name and e-mail
address of the sender without their explicit consent.
Best,
Mark
On Wed, May 15, 2019 at 4:44 PM Jennifer Bryan
wrote:
> Hello,
>
> Since this has turned into a worldwide code review, I will briefly a
27;: unused argument
(sample.kind = "Rounding")
See ‘/tmp/RtmpA4S3Ki/file32b81c218ac8/nprcmanager.Rcheck/00install.out’ for
details.
Information on the location(s) of code generating the ‘Note’s can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to ‘yes’.
Mar
ion()$minor) /
10.0)
if (version >= 3.6) {
args <- list(seed, sample.kind = "Rounding")
} else {
args <- list(seed)
}
suppressWarnings(do.call(set.seed, args))
}
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
Sa
some long
examples, but that function was never mentioned in the error, so it was
very confusing.
Cheers,
Mark
On Tue, Apr 30, 2019 at 4:44 AM peter dalgaard wrote:
> That line is a generic part of the timing (it records current time so that
> at the end you can do what amounts to "
added argument checks on these
functions? Could someone advise where to go to understand this error
better? And is it normal to get only one error at a time like this?
Thanks,
Mark
[[alternative HTML version deleted]]
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R-package-devel@r-
mally be accepted that
do not run on at least two of the major R platforms."
and also
"It should be normal for those without Windows machines of their own to use
the winbuilder service to check a package before submission. "
Best wishes,
Mark
[1] https://cran.r-project.org/web/pa
ot used any tidyverse packages as an Imports or Depends.
Hope this helps,
Best,
Mark
Op di 17 jul. 2018 om 23:10 schreef Michael Hannon <
jmhannon.ucda...@gmail.com>:
> Thanks, Mark. Your points are well-taken, but I wouldn't refer to
> this as a "small side-tra
Hope this helps,
Best,
Mark
Op di 17 jul. 2018 om 11:28 schreef Michael Hannon <
jmhannon.ucda...@gmail.com>:
> Thanks to John and Zhian for their recent and informative comments.
>
> Regarding check() and NSE: the moral seems to be that a little
> learning is a dangerous thing
.
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com
> On Jul 13, 2018, at 7:17 PM, Gábor Csárdi wrote:
>
> Hi Mark,
>
> seems like you have "Remotes: covr"
ameSurgerySheets, and one
public rmsharp/rmsutilityr both install fine.
Does anyone know what I may have broken or how?
Mark
R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-286
to set up such a repo.
-Mark
Op do 28 jun. 2018 om 13:56 schreef alejandro baranek <
alejandrobara...@gmail.com>:
> Hi Joris:
>
> Thank you for your comments.
> Of course, we are using https for aditional downloads.
>
> For the moment it is not needed to use github L
Dear Vincent,
I think this is little known, but you can get the CRAN result status of any
package from R, see tools::CRAN_check_results().
Best,
Mark
Op ma 25 jun. 2018 om 22:13 schreef Duncan Murdoch :
> On 25/06/2018 3:21 PM, Vincent van Hees wrote:
> > Dear all,
> >
> &
unfortunately not.
In any case, it would depend on the willingness of each CRAN mirror
maintainer to record and publish such statistics.
-M
Op vr 16 mrt. 2018 om 16:57 schreef Knut Krueger :
> Am 16.03.2018 um 13:44 schrieb Spencer Graves:
> >
> >
> > On 2018-03-16 06
Knut
AFAIR the download statistics are limited to downloads from RStudio's cloud
service, so none of the other CRAN mirrors are included. I think there is
no separation between updates, re-installs, or installs done automatically
by CI-services, for example.
-Mark
Op vr 16 mrt. 2018 om
Dear Hugh, this question was asked earlier on this list:
http://r.789695.n4.nabble.com/executable-files-R-package-td4390488.html
See especially the answer of Duncan Murdoch.
Best,
Mark
Op di 9 jan. 2018 om 03:26 schreef Hugh Parsonage :
> On https://cran.r-project.org/ , it says
>
&g
Dear Robert,
R supports package repositories out of the box. A repository is just a way
of organizing files. The most popular repositories are CRAN and
Bioconductor. There is even a package that allows you to set up your own
repository on Github (the drat package).
It depends on the repository ma
You could first have a look at the LaF packge. It does a lot of what you
want already.
-M
Op zo 17 sep. 2017 om 04:41 schreef Juan Telleria :
> Dear R Developers,
>
> I am writing as I would like to propose a github project for the creation
> of on-disk data.frames/tibbles.
>
> These new S3 class
I suggest you follow the link and check the notes..
On Sun, Sep 3, 2017, 1:06 PM Travers Ching wrote:
> I am trying to submit a package to CRAN. It did not pass the automated
> checks. However, I don't understand what it is I am supposed to fix.
>
> I have run R CMD check ... -- as-cran and it
ence that we can pass to Gabor, if it
indeed is an rhub issue.
Cheers,
Mark
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I have had no problems recently (having updated a pkg or two with this over
the last couple of weeks). Your question is not reproducible so its hard to
help...
best,
Mark
Op wo 21 jun. 2017 om 23:46 schreef Simon Barthelmé <
simon.barthe...@gipsa-lab.fr>:
> Dear list,
>
> Is anyb
I had the same experience. Also recently I uploaded a pkg without a
vignette but with a vignette engine specified in the DESCRIPTION. This
gave no error with R CMD check --as-cran (r-dev) but I did receive a
request to fix it.
-M
On Tue, Jun 20, 2017, 17:50 Thomas J. Leeper wrote:
> I've now h
les). Such packages should have
files src/Makefile and src/Makefile.win (unless intended for only
Unix-alikes or only Windows)."
Best,
Uwe Ligges
On 04.05.2017 17:09, Mark wrote:
Hi,
I am creating an R package with multiple c files within src directory.
If possible, I would like to crea
...
I could then load different dll files in the NAMESPACE:
useDynLib("mod01")
useDynLib("mod02")
useDynLib("mod03")
...
I don't know how can I set the MAKEVARS to do this correctly, and any
suggestions would be much appreciated.
Mark
___
Julia,
Just took the poll.
I think cranberries would deserve mention there as well. It is the only
continuous feed that reports in new pkgs and updates (that I know of).
Best,
Mark
On Mon, Mar 20, 2017, 14:57 Julia Silge wrote:
> I am contributing to a session at userR 2017 this coming J
Fwiw, there's also something called the awesome lists (
https://github.com/sindresorhus/awesome, and see the R list here:
https://github.com/qinwf/awesome-R), which is basically a kind of task
views for any language, and controlled via git pull requests.
Not sure if this would be a good alternativ
Avraham,
I can't help you out directly but Jeroen Ooms has a VM image with Solaris &
R available: https://github.com/jeroenooms/solarisvm
best,
Mark
Op zo 5 feb. 2017 om 21:27 schreef Avraham Adler :
> I recently changed the back-end compiled code for the Delaporte
> pack
__GNUC_MINOR__ <= 6
#else
#define HAS_REDUCTION
#endif
#endif
/* more code */
#ifdef HAS_REDUCTION
#pragma omp parallel for reduction(min:imin), reduction(max:imax)
#endif
for (int i=0; i:
>
>
> On 25.08.2016 13:14, Mark van der Loo wrote:
> > Thank you Peter, good poin
Thank you Peter, good points.
Good to know for sure (or a.s.) that compiler specification at CRAN is not
an option. The 4th option is interesting as well. I may just do that.
Thanks again!
Mark
Op do 25 aug. 2016 om 12:17 schreef peter dalgaard :
> I don't have hard inf
epend on R>=3.3
- Alter my code (as kindly suggested by Ott Toomet in [1])
- Tell CRAN to use the modern compiler.
Obviously, the latter would be easiest. Is this is even possible? For a
local installation I could set an environment variable[3], but how about
doing this at CRAN?
Thanks
Thanks Dirk! that did it. I wasn't aware of the trusty 14.04 option.
Just adding
sudo: required
dist: trusty
at the top of my .travis.yaml solved it
https://docs.travis-ci.com/user/trusty-ci-environment/,
Cheers,
Mark
Op wo 3 aug. 2016 om 14:38 schreef Dirk Eddelbuettel :
>
>
ed).
At the moment, I'm inclined against the idea, but I for one like to see me
proven wrong.
>> [1] actually, once we know a pkg is Recommended, the
>> 'if(requireNamespace)' could even be absorbed in the :: operator.
>I don't see how :: would be any different
not on the path (libgtk2 is on the
network, the VM just doesn't know yet). So I'd rather have a proper and
accurate error message (which is good practice anyway).
Best,
Mark
[1] actually, once we know a pkg is Recommended, the 'if(requireNamespace)'
could even be absorbed in
o with travis
building on a 12.04 ubuntu VM with a rather old gcc (4.6.3).
So I have two questions:
1. Has anyone else seen this? Or am I missing something?
2. Is there a workaround, or should I just go for another build service
(which one)?
Cheers,
Mark
[1] Linux duvel 4.4.0-31-generic #50-Ub
tter in the vignette, while focusing on the technical aspects in
the Rd files.
Hope that helps,
Mark
On Wed, Jul 13, 2016, 21:29 Boylan, Ross wrote:
> I have two questions, one substantive and one technical, about the
> relation between vignettes and help files. By "help files&
Mail the CRAN team.
On Wed, Jun 1, 2016, 10:24 Dean Attali wrote:
> My package 'ddpcr' was accepted into CRAN in 2016-02-19 and then updated on
> 2016-03-17. There were no errors or warnings or notes in my submission and
> it was accepted right away.
>
> I just tried going to its CRAN page and
cy issue, so in that sense yes. But to make it
robust, repo-owners probably need to adhere to either a pure R package
structure or start using makefiles for package building.
Best,
Mark
[1] When I say Dirk, I assume you know which one :-).
[2] At least, this used to be true. I haven't used i
I'm digressing.
Best,
Mark
Op do 8 okt. 2015 om 16:52 schreef Ben Bond-Lamberty :
> >Unfortunately the error diagnostics are not particularly helpful, only
> showing that four tests failed; the only common thread I see, maybe, is
> that all four tests--and no others--use R&#
Implanting is indeed a dirty trick. You could contact the maintainers of
geoR and ask if your code can be added to the package. Or perhaps they can
export some of the functionality you need.
/M
Op vr 28 aug. 2015 om 16:58 schreef Facundo Muñoz :
> Dear list,
>
> I have built a package geoR
compiler that claims compliance.
- Use higher-level paralellization, such as offered by the parallel or
partools
Best,
Mark
[1] Well, one problem is: how would install.packages know what binary to
choose: the one compiled by clang or the one compiled by gcc?
[2] https://cran.r-project.org/web/pa
this fashion.
> Supplying binaries seems the only option unless clang developers decide to
> support OpenMP, which seems unlikely since Apple wants to promote its own
> parallel computing tools.
>
> Michael Neale
> mcne...@mac.com
>
>
>
> On Aug 24, 2015, at 3:38 PM,
At least on linux, CRAN builds using openMP. I got a valgrind report once
[shame on me btw] showing that 9 (out of 10) threads were running examples.
So my best guess is that it will do the same for Windows since it also has
openMP support according to WRE[1]. I wouldn't know why not, except for
Berry,
why not use
\href{[your link]}{[link text]}
in the documentation details[1]?
Best,
Mark
[1] https://cran.r-project.org/doc/manuals/R-exts.html#Marking-text
Op di 18 aug. 2015 om 13:21 schreef Duncan Murdoch :
> On 18/08/2015 6:12 AM, Berry Boessenkool wrote:
> > Hi all,
&
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