Hi all,
I've made a network of OTUs using phyloseq. Now, I'd like to correlate
environmental variables to the clusters I observed. Anybody here who has
an idea on how to do this exactly? Perhaps there are multiple ways, or
if it is possible using another package (network, sna, ...), please
Hi Bjorn,
You could check out Local Similarity Analysis (http://meta.usc.edu/softs/lsa/)
or alternatively, network assortativity e.g. in {igraph}
http://www.inside-r.org/packages/cran/igraph/docs/assortativity
Hope it helps,
Cheers,
Johannes
On May 11, 2015, at 4:40 PM, Bjorn Tytgat wrote:
