[R-sig-Geo] Help me please

2014-07-29 Thread A. Robles R.
I have the following problem: I am using the reprojectHDF() function (http://r-gis.net/?q=ModisDownload

Re: [R-sig-Geo] Help me please

2014-07-29 Thread A. Robles R.
I change the input syntax: input-list.files(path=.,.hdf,all.files=T,recursive=T) and now my error is: reprojectHDF(hdfName=input,filename=outname,MRTpath=~/MRT/bin,+ resample_type=NEAREST_NEIGHBOR,+

Re: [R-sig-Geo] how to change the fit.method from autoKrige, please

2014-07-29 Thread Jon Skoien
It seems you cannot change the fit.method from autoKrige or autofitVariogram, it uses the default from gstat::fit.variogram, which is method 7. However, you should probably first try to see why you get the error and what is zero. I assume that your error is that you have zero distances

Re: [R-sig-Geo] Help me please

2014-07-29 Thread Frede Aakmann Tøgersen
Hi It seems that you need to set an environment variable used by programs in ~/MRT/bin. I don't have this installed so please have a look for some README files in ~/MRT or other places to find which value the variable are supposed to have. In R before calling reprojectHDF() do a:

[R-sig-Geo] raster - 4D Bricks

2014-07-29 Thread Mark Payne
Hi, I have a 4D climate model output that I am trying to work with via raster, and that is unfortunately giving problems. I create the object as a brick: b class : RasterBrick dimensions : 220, 254, 55880, 756 (nrow, ncol, ncell, nlayers) resolution : 1, 1 (x, y) extent : 0.5,

Re: [R-sig-Geo] Special issue: Spatial and spatio-temporal models for interpolating climatic and meteorological data

2014-07-29 Thread Tim Appelhans
Dear R-sig-geo, is anyone interested in working together on a submission for the below mentioned special issue of SPASTA? The situation is as follows: We have about 3.5 yrs worth of temperature and humidity data from Mt. Kilimanjaro at hourly resolution. In addition we have numerous

Re: [R-sig-Geo] how to change the fit.method from autoKrige, please

2014-07-29 Thread Hodgess, Erin
Greatthanks so much! Sincerely, Erin From: Jon Skoien [jon.sko...@jrc.ec.europa.eu] Sent: Tuesday, July 29, 2014 2:06 AM To: Hodgess, Erin; r-sig-geo@r-project.org Subject: Re: [R-sig-Geo] how to change the fit.method from autoKrige, please It seems

Re: [R-sig-Geo] raster - 4D Bricks

2014-07-29 Thread Michael Sumner
Are you sure that your b is still really a RasterBrick? That message comes if you give the functions character: library(raster) dropLayer(sometext, 1) Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘dropLayer’ for signature ‘character’ (Basically

[R-sig-Geo] GAM: which package?

2014-07-29 Thread Maurizio Marchi
Hi everybody, I would like to try to work with generalized Additive Models to interpolate some climatic data and to build a Species Distribution Model. The aim is to check performances comparing them with works made by my colleague. I was wondering: Which R package is the most complete? here

[R-sig-Geo] Classical or robust variogram to model temporal autocorrelation?

2014-07-29 Thread adamsmith
Hello list, I'm modeling counts of organisms over time at eleven locations. I'd like to account for temporal autocorrelation in the counts (assuming it's present), which I'm exploring (and fitting) using gstat's variogram function on the residuals of a generalized linear model not incorporating

[R-sig-Geo] question about autoKrige anis1 and anis2

2014-07-29 Thread Hodgess, Erin
Hello again! I was using autoKrige (finally successfully!) and was looking at the model results. I got anis1 of 1,1 and anis2 of 1,1. How does this relate to the anis in the vgm function, please? Thanks, Erin [[alternative HTML version deleted]]

Re: [R-sig-Geo] GAM: which package?

2014-07-29 Thread Henk Sierdsema
Hi Maurizio, If your main interest is distribution modelling I would skip the GAM's and their inherent problems with overfitting, covariates with high correlations, etc. and use something like Random Forests or Generalized Boosting Models/Boosted Regression Trees. They have proven to be

[R-sig-Geo] plotting raster returns error about NA

2014-07-29 Thread Herry
Hi List, surely others have come across this and the solution is probably simple - I cannot find it online anywhere. I am trying to plot a gtiff raster (produced in grass 6.4.2, lzw compression) image(rs) works fine but when trying to use plot I get the following error message: Error in