Re: [R-sig-Geo] Extracting minimum convex polygons of species distributions

2012-03-16 Thread Anne Ghisla
On Thu, 15 Mar 2012 10:56:45 -0500 Jaime Burbano Girón jaimeb...@gmail.com wrote: Hi Louise, I have calculated minimum convex polygons with calc_mcp function from package aspace, but I think this function is not longer available, so I attach my script using it, where the function is written.

[R-sig-Geo] Extracting minimum convex polygons of species distributions

2012-03-15 Thread Louise Mair
Hello, I have a distribution dataset for species consisting of xy coordinates at the 1km resolution, with only presence data. So a simplified example of a species distribution might be: y - rbind(as.integer(rnorm(100,50,20)), as.integer(rnorm(200,100,30)), as.integer(rnorm(100,180,15))) x -

Re: [R-sig-Geo] Extracting minimum convex polygons of species distributions

2012-03-15 Thread Mathieu Basille
Dear Louise, I think there is a couple of possibilities. You might be interested in clusthr, LoCoH.* and CharHull, also in the package adehabitatHR. Please check the vignette of the package, section 6: vignette(adehabitatHR) In addition, a new estimator could be useful to you as well: the

Re: [R-sig-Geo] Extracting minimum convex polygons of species distributions

2012-03-15 Thread Jaime Burbano Girón
Hi Louise, I have calculated minimum convex polygons with calc_mcp function from package aspace, but I think this function is not longer available, so I attach my script using it, where the function is written. An other tool that I have used is the Hawth's Analysis Tools extension for ArcGIS:

Re: [R-sig-Geo] Extracting minimum convex polygons of species distributions

2012-03-15 Thread Jaime Burbano Girón
The script 2012/3/15 Jaime Burbano Girón jaimeb...@gmail.com Hi Louise, I have calculated minimum convex polygons with calc_mcp function from package aspace, but I think this function is not longer available, so I attach my script using it, where the function is written. An other tool

Re: [R-sig-Geo] Extracting minimum convex polygons of species distributions

2012-03-15 Thread Colin Rundel
While I think it is somewhat simplistic for modeling a species' distribution you can use a convex hull to get a convex bounding polygon for your presence locations. This will not take into account islands but you can remove non-terristrial areas by getting an intersection of the bounding