Re: [R-SIG-Mac] sessionInfo on Monterey

Just now upgraded to macOS 11.5.2 > sessionInfo() R version 4.1.1 (2021-08-10) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 11.5.2 Berend hasselman > R version 4.1.0 (2021-05-18) > Platform: x86_64-apple-darwin17.0 (64-bit) > Running under: macOS B

Re: [R-SIG-Mac] catalina humbug

Do you by any chance have ~/.R/Makevars ? If yes does it define CC and CXX and LDFLAGS with clang7? Try removing them. Berend > On 14 Oct 2020, at 14:14, Koenker, Roger W wrote: > > Humm… so I have now removed clang7 from /usr/local and I now see: > > /usr/local/clang7/bin/clang > -I"/Libr

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

thon.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/usr/local/git/bin > > > I do find "/Library/TeX/texbin/pdflatex" on my hard drive, but "which > pdflatex" doesn't find it. > > Try

Re: [R-SIG-Mac] Problem R-4.0 beta and Rmpfr (pre-release)

LAS: >> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib >> LAPACK: >> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib >> >> locale: >> [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-

Re: [R-SIG-Mac] Problem R-4.0 beta and Rmpfr (pre-release)

TF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> loaded via a namespace (and not attached): >> [1] compiler_4.0.0 >> >> >

[R-SIG-Mac] Problem R-4.0 beta and Rmpfr (pre-release)

If the pre-release binary of Rmpfr is intended for the R-4.0 beta then I am experiencing "illegal operations" with "illegal opcode" errors. R version 4.0.0 beta (2020-04-14 r78227) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.4 Matrix products: default BLAS:

Re: [R-SIG-Mac] Please test R 4.0.0 pre-releases!

Simon, I have tested an R-4.0.0 (i.e. R version 4.0.0 alpha (2020-04-01 r78130) with my two packages (nleqslv and geigen) and all my private tests. I have not found any problems with checking and testing these packages. (I used Apple clang and Coudert's gfortran 8.2) The only issue I have encount

Re: [R-SIG-Mac] Tools Update for R3.5?

> On 26 May 2018, at 15:17, Roger Koenker wrote: > > Thanks Berend that helps considerably, I added something for gfortran as > follows: > > CC=/usr/local/clang6/bin/clang > CXX=/usr/local/clang6/bin/clang++ > LDFLAGS =-L/usr/local/clang6/lib > F77=/usr/local/gfortran/bin/gfortran > FLIBS=-L

Re: [R-SIG-Mac] Tools Update for R3.5?

> On 26 May 2018, at 14:19, Berend Hasselman wrote: > > >> On 26 May 2018, at 13:36, Roger Koenker wrote: >> >> I’ve just installed R3.5 and clang6 and fortran 6.1 and now realize that the >> compiler packages install in >> /usr/local/clang6 an

Re: [R-SIG-Mac] Tools Update for R3.5?

> On 26 May 2018, at 13:36, Roger Koenker wrote: > > I’ve just installed R3.5 and clang6 and fortran 6.1 and now realize that the > compiler packages install in > /usr/local/clang6 and /usr/local/gfortran respectively. I expected that > there would also be some automatic > symbolic links to

[R-SIG-Mac] El Capitan binary package of nleqslv 3.3.1 not available

. What's going on? regards, Berend hasselman ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] missing module when compiling R pkg:rms or external package SYMPHONY (in support of Bioc pkg symphony)

the problem. Previously I had .../gfortran/lib at > the end of DYLD_LIBRARY_PATH." > > What more do I need to supply? > A binary version of rms_5.1-1 is available on CRAN (now). I downloaded the rms source (manually) and ran R CMD check on the source with this: _R_CHECK

[R-SIG-Mac] Packages gmp and Rmpfr

Packages gmp and Rmpfr are currently not available as el Capitan binaries (for R-3.4.0). Will they be available for R-3.4.0 or do we have to build the packages ourselves from scratch? Berend Hasselman ___ R-SIG-Mac mailing list R-SIG-Mac@r

[R-SIG-Mac] Wrong link on CRAN Mac subpage

y"? Apologies for nitpicking but the link to libs didn't "work". Berend Hasselman ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

[R-SIG-Mac] Testing R 3.4.0 RC r72556

The issues I have had with R 3.4.0 RC appear to have mostly been resolved macOS El Capitan. (release candidate r72556 from http://r.research.att.com) Many packages using Rcpp now do link to the libc++.1.dylib in the R framework. The following packages using Rcpp that I have installed are still

Re: [R-SIG-Mac] Testing R 3.4.0 RC r72542

Simon, > On 19 Apr 2017, at 21:43, Simon Urbanek wrote: > >> >> On Apr 19, 2017, at 1:48 PM, Berend Hasselman wrote: >> >> >>> On 19 Apr 2017, at 16:24, Simon Urbanek wrote: >>> >>> Ok, found the issue with 3. -- it works just fi

Re: [R-SIG-Mac] Testing R 3.4.0 RC r72542

> On 19 Apr 2017, at 16:24, Simon Urbanek wrote: > > Ok, found the issue with 3. -- it works just fine on Sierra, but there is a > bug in El Capitan which fails to accept 127.0.0.1 in the ATS exception list > so it's in fact impossible to white-list it. Apple has fixed that bug in > Sierra bu

Re: [R-SIG-Mac] Testing R 3.4.0 RC r72542

> On 19 Apr 2017, at 19:11, Simon Urbanek wrote: > >>> .. >> >> I'm using https://cran.r-project.org in R.app >> I'll wait and try later or tomorrow. >> > > Or use http://r.research.att.com as your CRAN mirror (it is the master for > Mac binaries). > > Done that. Rcpp.so now links to

Re: [R-SIG-Mac] Testing R 3.4.0 RC r72542

Simon, > On 19 Apr 2017, at 15:44, Simon Urbanek wrote: > >> >> On Apr 19, 2017, at 4:21 AM, Berend Hasselman wrote: >> >> >> Most of the problems I mentioned yesterday with R 3.4.0 RC still exist. >> (see thread https://stat.ethz.ch/

[R-SIG-Mac] Testing R 3.4.0 RC r72542

Most of the problems I mentioned yesterday with R 3.4.0 RC still exist. (see thread https://stat.ethz.ch/pipermail/r-sig-mac/2017-April/012287.html). There is now a libc++ in the R framework: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libc++.1.dylib 1. Rcpp was not updated and

[R-SIG-Mac] Problem with R.app 1.70 on macOS El Capitan

More testing of R 3.4.0: R version 3.4.0 RC (2017-04-17 r72531) -- "You Stupid Darkness" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under c

Re: [R-SIG-Mac] Problem with Rcpp on R-3.4 beta (r72492)

gt; On 18 Apr 2017, at 19:35, Simon Urbanek wrote: > > Berend, > > >> On Apr 18, 2017, at 1:24 PM, Berend Hasselman wrote: >> >> >> Simon, >> >> Thanks for the info. >> I have downloaded R 3.4.0 RC r72531. >> And installed clan

Re: [R-SIG-Mac] Problem with Rcpp on R-3.4 beta (r72492)

ges for R 3.4.0 have been > more radical as we target more recent macOS for better performance and > features. > > Thanks, > Simon > > >> On Apr 7, 2017, at 5:11 AM, Berend Hasselman wrote: >> >> >> Hi, >> >> I have downloaded and ins

[R-SIG-Mac] Fwd: More problems with R-3.4.0 beta (R version 3.4.0 beta (2017-04-07 r72496)

Forwarding this message from Rodney Sparapani about my post "More problems ...". Berend Hasselman > Begin forwarded message: > > From: "Sparapani, Rodney" > Subject: [R-SIG-Mac] More problems with R-3.4.0 beta (R version 3.4.0 beta > (2017-04-07 r72496) &

[R-SIG-Mac] More problems with R-3.4.0 beta (R version 3.4.0 beta (2017-04-07 r72496)

Hi, My OS: OS X El Capitan (10.11.6) I installed R version 3.4.0 beta (2017-04-07 r72496) today from the package R-3.4-branch-el-capitan.pkg obtained from http://r.research.att.com. There are several problems with the beta version of R 3.4.0 on macOS. Problem 1 There appears to

[R-SIG-Mac] Problem with Rcpp on R-3.4 beta (r72492)

1.0.0, current version 1226.10.1) I don't have /usr/local/clang4/lib/libc++.1.dylib. I wouldn't know where to get it from. AFAIK The macOS Commandline Tools do not install stuff in /usr/local. If this isn't a mishap: where do we get the necessary libc++.1.dylib fro

Re: [R-SIG-Mac] Problem with RJDBC in OS X 10.11

> On 18 Jun 2016, at 00:28, MacQueen, Don wrote: > > I’m not sure the best place to ask about this, so I’ll start here, since the > problem appears to be configuring Java on a Mac to support R packages. > Unfortunately, my understanding of how to configure and manage Java is > essentially non

Re: [R-SIG-Mac] Success with gfortran 5.1 on El Cap and R 3.3.0; was ... Error in compiling package with Fortran 4.8.2 on El Cap

> On 21 Apr 2016, at 19:15, David Winsemius wrote: > > 18 months ago I volunteered to fix a very tiny error in the documentation in > the abandoned package, muhaz, so I am now the maintainer. I'm trying to be a > responsible maintainer and test my package with R 3.3.0 in advance of its > rele

Re: [R-SIG-Mac] Issues with rJava on OS X El Capitan

> On 15 Feb 2016, at 15:48, Brandon Hurr wrote: > > Berend, > > I realize this is slightly off the goal of getting java working on your > system, but it looks like you're using rJava to extract data from Excel > files. Have you considered or tested using the readXL package instead? I > beli

Re: [R-SIG-Mac] Issues with rJava on OS X El Capitan

LD_FALLBACK_LIBRARY_PATH") [1] "" and Rstudio (Version 0.99.878) shows this > Sys.getenv("DYLD_FALLBACK_LIBRARY_PATH") [1] "/Library/Frameworks/R.framework/Resources/lib:/Users/berendhasselman/lib:/usr/local/lib:/usr/lib::" Where it got "/Users/berendha

Re: [R-SIG-Mac] Issues with rJava on OS X El Capitan

> On 14 Feb 2016, at 12:31, Prof Brian Ripley wrote: > > On 14/02/2016 11:24, Berend Hasselman wrote: >> >>> On 14 Feb 2016, at 11:48, Prof Brian Ripley wrote: >>> >>> Your Java is seriously old. Start by updating it (1.8.0_74 is current, >>

Re: [R-SIG-Mac] Issues with rJava on OS X El Capitan

ompatibility version 150.0.0, current version 1256.14.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1226.10.1) Berend > On 14/02/2016 09:22, Berend Hasselman wrote: >> I have installed rJava, xlsx, xlsxjars, XLConnect and XLConnectJars. >> >&g

[R-SIG-Mac] Issues with rJava on OS X El Capitan

n ((null)) not available. Using Java at "" instead. JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib JavaVM FATAL: Failed to load the jvm library. sessionInfo (after library(xlsx) and library(XLConnect)) and javareconf output below. What is going on? What is the solution f

Re: [R-SIG-Mac] XCode / gcc / R compatibility issues on Yosemite with XCode 7 and on El Capitan

> On 13 Oct 2015, at 16:14, Prof Brian Ripley wrote: > > On 13/10/2015 14:36, Simon Urbanek wrote: >> >> On Oct 12, 2015, at 4:22 PM, Jenny Brown wrote: >> >>> Thank you to both of you. I believe my issue is solved by using the binary >>> distribution of gfortran libraries, as it was dynamic

[R-SIG-Mac] "Layout still needs update ..." in R.app on OS X Yosemite

I’m running R version 3.2.2 Patched (2015-08-14 r69078) -- "Fire Safety” [R.app GUI 1.66 (6996) x86_64-apple-darwin13.4.0] on OS X Yosemite 10.10.5. This is the Mavericks build. After starting R.app and issuing CMD+, to access the Preferences. and closing the preferences window I get this erro

Re: [R-SIG-Mac] Two UI suggestions: 1. key bindings for help-page navigation buttons; 2: increase font-size of function status bar

> On 16-08-2015, at 18:42, Simon Urbanek wrote: > > > On Aug 15, 2015, at 1:27 PM, David Winsemius wrote: > >> >> On Aug 15, 2015, at 6:22 AM, Tim Bates wrote: >> >>> Hi, >>> A couple of minor suggestions for the mac GUI. >>> >>> First, Help window back-forward buttons. >>> >>> Often when

Re: [R-SIG-Mac] Two UI suggestions: 1. key bindings for help-page navigation buttons; 2: increase font-size of function status bar

> On 15-08-2015, at 21:45, Tim Bates wrote: > >> On my machine OSX 10.7.5 with SL-vers of R 3.2.1, R.app GUI 1.66 (6956), the >> cmd-right-arrow and the cmd left arrow give forward and back behavior in >> help. > > So it is. Not having this in any menu (unlike, say, those same keys for back

Re: [R-SIG-Mac] Two UI suggestions: 1. key bindings for help-page navigation buttons; 2: increase font-size of function status bar

> On 15-08-2015, at 15:22, Tim Bates wrote: > > Hi, > A couple of minor suggestions for the mac GUI. > > First, Help window back-forward buttons. > > Often when the user has opened help, they want to navigate back a page. > Currently the back ( "<“ ) and forward ( “>”) buttons in the help win

Re: [R-SIG-Mac] Problems to install a package

> On 03-08-2015, at 13:59, peter dalgaard wrote: > > I have now tried doctoring $RHOME/etc/Makeconf to use a MacPorts build of > gfortran-4.8 that I had lying around, and lo and behold: It does source > installs of nleqslv, geigen, QZ, rms with no trouble at all. > Good to know that. > So I

Re: [R-SIG-Mac] Problems to install a package

> On 31-07-2015, at 22:14, peter dalgaard wrote: > >> >> On 31 Jul 2015, at 21:36 , Berend Hasselman wrote: >> >>> >>> On 31-07-2015, at 20:46, peter dalgaard wrote: >>> >>>> >>>> On 31 Jul 2015, at 12:33 , Timo

Re: [R-SIG-Mac] Problems to install a package

> On 31-07-2015, at 20:46, peter dalgaard wrote: > >> >> On 31 Jul 2015, at 12:33 , Timothy Bates wrote: >> >> This happened for me too: that Intel Core 2 is just too old for the compiler. >> >> I used it as a stimulus to buy a new laptop… As a bonus, everything is ~10x >> faster >> Best, t

Re: [R-SIG-Mac] Problems to install a package

> On 30-07-2015, at 21:28, Davor Cubranic wrote: > > It’s not just old Macs: I see the same warning on a late-2013 MacBook Pro (so > the second-latest generation): > The warning is gfortran-4.8 and OS X Yosemite specific; AFAIK it has nothing to do with the specific processor. Only the “ill

Re: [R-SIG-Mac] Problems to install a package

> On 29-07-2015, at 15:59, José Carlos Guerrero Antúnez > wrote: > > Hi, > > My machine is a IMac (21.5-inch, Late 2009), the package is at > http://r-forge.r-project.org/R/?group_id=2103, > If that machine has an Intel Core 2 Duo processor and not an i3,i5, or i7 processor you can’t use gf

Re: [R-SIG-Mac] Problems to install a package

> On 28-07-2015, at 21:13, José Carlos Guerrero Antúnez > wrote: > > Hi, > > First, thank you for your answers, and I have to admit that don't prepare > to do a bit more work, because I'm a user that I have no programming > skills, and therefore, I depend on people like you, to use these progr

Re: [R-SIG-Mac] Problems to install a package

> On 28-07-2015, at 04:49, Kevin Ushey wrote: > > There error here is, as it says: > >> make: gfortran-4.8: No such file or directory > > In other words, `make` is attempting to call `gfortran-4.8` to compile > FORTRAN code in your package, but is unable to find it -- likely > because it's not

Re: [R-SIG-Mac] R 3.2.0 Mavericks/Yosemite: help.search showing error

> On 14-06-2015, at 19:43, David Winsemius wrote: > …... >> >> Running R-3.2.1 RC on Yosemite 10.10.3 Mavericks version >> >> Result of sessionInfo(): >> >> R version 3.2.1 RC (2015-06-10 r68503) >> Platform: x86_64-apple-darwin13.4.0 (64-bit) >> Running under: OS X 10.10.3 (Yosemite) >> >> l

Re: [R-SIG-Mac] R 3.2.0 Mavericks/Yosemite: help.search showing error

> On 14-06-2015, at 17:55, David Winsemius wrote: > >> >> On Jun 14, 2015, at 8:18 AM, David Winsemius wrote: >> >> >> On Jun 13, 2015, at 11:04 PM, Berend Hasselman wrote: >> >>> >>>> On 14-06-2015, at 06:25, Ramnik Bansal w

Re: [R-SIG-Mac] Bug related to locale changes.

> On 08-06-2015, at 13:40, Duncan Murdoch wrote: > > I posted this to R-devel yesterday; from responses received, it appears > to be OSX-specific (maybe Mavericks-specific). > > In an R session started from the terminal with R --vanilla, I see this: > >> Sys.setlocale(locale="en_CA") > [1] "en

Re: [R-SIG-Mac] Problem with GSUB in PEIP

15, Mitchell Hall > University of North Carolina > Chapel Hill, NC 27599-3315 > (919) 962-1562 > (919) 962-3869 (Chair Office) > FAX (919) 966-4519 > > jonathan_l...@unc.edu > http://www.unc.edu/~leesj > > ========== > > > &g

Re: [R-SIG-Mac] Problem with GSUB in PEIP

> On 04-05-2015, at 22:22, Simon Urbanek wrote: > > You may want to report to the maintainer - the GSVD sources have the > following which is completely broken: > >> GSVD > function (A, B) > { >SS = Sys.info() >ssysname = SS[[1]] >if (ssysname == "Linux") { >lpath = paste(

Re: [R-SIG-Mac] latex errors, Rd problems

> >> On 21/03/2015 12:38, Adrian Dușa wrote: >> >>> [...] >> >> So the next step is to run R CMD Rd2pdf --no-clean on the unpacked package >> sources and look at the logs in its check directory. You may need to run >> texi2dvi -D --pdf on the .tex file produced there. > > Already tried that (

Re: [R-SIG-Mac] checking for pdflatex

John, > On 16-03-2015, at 18:53, John Fox wrote: > > Dear Berend, > …. >> >> For what it’s worth: I have the following code in the .First function in >> ~/.Rprofile: >> (R 3.1.3 on OS X Yosemite) >> >>if( .Platform$GUI == "AQUA" ) { >># this appends /usr/local/bin to what is alread

Re: [R-SIG-Mac] checking for pdflatex

> On 16-03-2015, at 17:25, John Fox wrote: > > Dear Simon, > > Thanks for this, and to the others who responded to my question. The FAQ and > Matt Denwood's response jogged my memory, and reminded me that I encountered > this problem before. > > In this case, I don't see a good solution, but

Re: [R-SIG-Mac] Rsafd Package

> On 02-02-2015, at 18:09, Samit Paul wrote: > > Hello Team, > > I am searching for Rsafd package in R for windows. Can you please provide > the suitable link or files for the version of R I am using? Please get the > detail below: > This doesn’t belong on this list. This the list for R on a

Re: [R-SIG-Mac] sh: convert: command not found

" >[7] "SSH_AUTH_SOCK" "TMPDIR" “USER" > > No idea if this is expected or meaningful, but I thought I would post > this for posterity. > See this discussion of the issue: http://tex.stackexchange.com/que

[R-SIG-Mac] Problem with gfortran 4.8.2

I am experiencing a problem with gfortran 4.8.2 obtained from r.research.att.com (http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2). Compiling a simple program (in fixed format) program test2 double precision a a = 12.438739 print *, a

[R-SIG-Mac] Opening NEWS in R.app gives error message

In R.app (version 1.64 (6734)) for R version 3.10 regardless of Snow Leopard or Mavericks the menu entry Help, What’s New In This Version shows the R.app NEWS but not the R NEWS. An error message is issued in the console: The file /Library/Frameworks/R.framework/Resources/NEWS does not exist

Re: [R-SIG-Mac] request for removal from R-sig

On 11-04-2014, at 16:59, Marc Dubin wrote: > Hello, > > Please remove me from this mailing list. > > Please confirm that I have been removed. > Go to the link at the bottom of each mail to R-SIG-Mac (https://stat.ethz.ch/mailman/listinfo/r-sig-mac) You unsubscribe yourself. Nobody is going

Re: [R-SIG-Mac] [R-sig-mac] Hmisc installed but won't load

On 24-03-2014, at 21:23, Don McKenzie wrote: > The plot thickens. I do indeed have latticeExtra installed, but observe. Is > it turtles on down…? (and yes I have lattice installed too) > >> library("latticeExtra") > Loading required package: RColorBrewer > Loading required package: lattice > E

Re: [R-SIG-Mac] R 3.0.2/3.0.3 source install problems on OS X 10.9.2

On 11-03-2014, at 05:32, Bryan Renne wrote: > Dear Simon: > > On Mon, Mar 10, 2014 at 11:23 AM, Simon Urbanek > wrote: >> Bryan, >> >> based on the gist output I think I have a candidate - please check that >> you're not re-defining TMP or TMPDIR to a relative path - that would break >> pre

[R-SIG-Mac] What's up with R.research.att.com?

I haven't been able to reach R.research.att.com for quite some days. What's up? Berend ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Problems loading Rcmdr on a Mac 10.7.2 and a Mac 10.6.8

On 20-09-2013, at 15:08, John Fox wrote: > Dear Brian, > > I've modified the Mac installation instructions again to add back the check > for a prior installation of X-Windows. The instructions are at > . > A small typo

Re: [R-SIG-Mac] Problems loading Rcmdr on a Mac 10.7.2 and a Mac 10.6.8

On 20-09-2013, at 11:29, peter dalgaard wrote: > > On Sep 20, 2013, at 08:49 , Prof Brian Ripley wrote: >>> >> >> I am not so sure about that. It will do no harm running CRAN binary R. But >> it does mean that there are multiple versions of X11 things about and that >> will cause problems

Re: [R-SIG-Mac] R 3.0.1 build from sources: Wrong library paths

On 12-09-2013, at 20:16, Simon Zehnder wrote: > Simon, > > I found the fix: I needed the configure option --with-included-gettext. This > is now the whole sequence of processes I did: > > 1. Install XCode (newest version) > 2. Install Command Line Tools (in XCode) > 3. On the shell I used s

Re: [R-SIG-Mac] Trouble with tcltk

On 03-09-2013, at 12:21, Michael Kubovy wrote: > Many packages require tcltk. > > I have installed > http://cran.r-project.org/bin/macosx/tools/tcltk-8.5.5-x11.pkg and yet, when > I try > library(gamlss.demo) > I get > Loading required package: rpanel > Loading required package: tcltk > Error

Re: [R-SIG-Mac] R.app doesn't respect DYLD_FALLBACK_LIBRARY_PATH

On 08-08-2013, at 22:42, Tom Schoenemann wrote: > Hello, > > I am trying to get a custom R package (from another group) to run on my > system. If I call it from the command line r, it works fine. If I call it > from R.app, it complains with: > > Error in dyn.load(file, DLLpath = DLLpath, ..

[R-SIG-Mac] Installing R-3.0.0 RC (2013/03/30, r62448) installs tcl/tk in /local

I've just installed R-3.0.0 RC. I noticed that tcl/tk 8.6 was installed in /local. Shouldn't this be /usr/local? Can I just remove /local? Berend ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R.app editor and Rswitch

On 18-01-2013, at 08:08, Prof Brian Ripley wrote: > On 17/01/2013 20:26, Matthew Fero wrote: >> I have a couple of questions: >> >> 1. Should I be able to specify the background color of an R64.app editor >> window? Setting the background color of the console does not seem to affect >> the e

Re: [R-SIG-Mac] Why do i get: Error: unexpected input in "A<-lm(GandW ~ Authocracy,Data)" ?

On 25-11-2012, at 21:01, Faradj Koliev wrote: > Every time i insert : A<-lm(GandW ~ Authocracy;Data) i get this error: > Error: unexpected input in "A<-lm(GandW ~ Authocracy,Data)" > > Iam using Mac. And i have checked that "Data" has been read correctly. The > same command with the same

Re: [R-SIG-Mac] Making package "frontier" available for Mac: debugging Fortran code

Arne, I believe I have found the bug. Thanks to the traceback of Simon. On 03-12-2012, at 20:05, Simon Urbanek wrote: > Arne, > > unfortunately I don't think I can help you with Fortran code, but this is the > trace from the crash: > >> example(summary.frontier) > [...] > smmry.># Effici

Re: [R-SIG-Mac] Making package "frontier" available for Mac: debugging Fortran code

On 03-12-2012, at 16:35, Arne Henningsen wrote: > Dear Mac users > > I am the maintainer of the R package "frontier." Some Mac users made > me aware of that this package is not available for their system [1], > because its Fortran code causes a segmentation fault when "R CMD > check" runs the ex

Re: [R-SIG-Mac] library not found for -lX11

relevant sections of R's configure script. Very clever but too difficult for me. I will happily test for the OP to see if the package will install out of the box. And not more than that. Berend > >> BW >> >> F >> >> >> >> >> &g

Re: [R-SIG-Mac] library not found for -lX11

On 29-11-2012, at 17:16, Jakson Alves de Aquino wrote: > On Thu, Nov 29, 2012 at 10:26 AM, Prof Brian Ripley > wrote: >>> On Thu, Nov 29, 2012 at 10:05 AM, Prof Brian Ripley >>> wrote: But those paths should not be used unconditionally (as you have). They are not right for most

Re: [R-SIG-Mac] R 32-bit suddenly the default on Mountain Lion 10.8.2?

On 13-11-2012, at 21:07, Federico Calboli wrote: > On 13 Nov 2012, at 19:59, Prof Brian Ripley wrote: > >> Marc, >> >> Start with 'which R', or run /usr/bin/R explicitly. > > $ which R > /usr/bin/R > > >> That should be a symlink to >> >> /Library/Frameworks/R.framework/Resources/bin/R >

Re: [R-SIG-Mac] R.app and launchpad and 32 bit

On 08-11-2012, at 13:24, Andrew Yee wrote: > Hi, I'm new to Mac and when i installed the R.app, I noticed that it > put the 32 bit version of R onto the Launchpad instead of the 64 bit > version. Is this by design? Both R.app and R64.app are installed in /Applications as long as you haven't cu

Re: [R-SIG-Mac] R script in batch mode on Mac

On 07-11-2012, at 12:08, didier peeters wrote: > Hi list, > > I would like the run a R script in a batch mode. So i use a command line > like this : > > for i in *.xlsx; do cat $i | echo 'argv <- $i; source("path/to/script.R")' | > R --vanilla --slave ; done > > which gives the error " Erre

Re: [R-SIG-Mac] Re-creating PDF's

On 22-10-2012, at 19:36, Fisher Dennis wrote: > R 2.15.1 > Lion > > Colleagues > > In previous versions of OS X, I might do the following: > 1. create a PDF in R > pdf(FILENAME) > plot(1) > dev.off() > 2. open the file using the command

Re: [R-SIG-Mac] install question

On 18-10-2012, at 17:07, Hodgess, Erin wrote: > This would be stuff like "sudo apt-get install r-cran-rgeos" please > That is not how you install R packages on (Mac) OS X. - Start R.app or R64.app. - Select from the menu Packages & Data, Package Installer - Click Get List - Filter with rgeos -

Re: [R-SIG-Mac] ‘package ‘XML’ is not installed for 'arch=x86_64'’

On 29-09-2012, at 11:58, ricardo.julio.rodriguez.fernan...@sergas.es wrote: > > I bet Simon is right. Two main reasons: > > 1. I was following a blog post on how to set up FastRWeb on Mac OS X. This > post (http://www.r-bloggers.com/setting-up-fastrweb-on-mac-os-x/) speaks > about installing

Re: [R-SIG-Mac] R compile from sources: error in make with gcc-4.7

On 14-09-2012, at 16:01, Simon Zehnder wrote: > Running through the errors of my make output on http://pastebin.com/HXqLgH4b > (without aqua) pulled my attention to the following error: > > In file included from ../../../../src/modules/lapack/vecLibg95c.c:5:0: > /System/Library/Frameworks/vecL

Re: [R-SIG-Mac] mach_override

On 01-09-2012, at 17:26, Keith Weintraub wrote: > I previously posted this message to r-help-request and it was suggested that > I post here instead. > > Note that I have re-installed R and gotten the same result. > > Folks, > I just upgraded my Mac to Mountain Lion and on running R.app I get

[R-SIG-Mac] Setting PATH in ~/.Renviron gives a different result in R64.app compared to result from R run in Terminal

I have a ~/.Renviron file to set some environment variables. The contents are ~/.Renviron contents --- R_LIBS_USER="~/Library/R/%v/library" PAGER="/usr/bin/aless" PATH="/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin" Using Sys.getenv in R

Re: [R-SIG-Mac] texi2dvi error "Sweave" and "exams" (Paul Ossenbruggen)

Forgot to send this to the list. On 20-08-2012, at 22:26, Paul Ossenbruggen wrote: > In R GUI, I submitted and got: > >> Sys.getenv("PATH") > [1] "/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin" >> > > In terminal, I was not so fortunate. I got errors. I am sorry but I never run > applications

Re: [R-SIG-Mac] texi2dvi error "Sweave" and "exams" (Paul Ossenbruggen)

On 20-08-2012, at 21:30, Simon Urbanek wrote: > > On Aug 20, 2012, at 2:58 PM, Berend Hasselman wrote: > >> >> On 20-08-2012, at 20:25, Paul Ossenbruggen wrote: >> >>>>I downloaded and installed the big MacTex.pkg and MacTeXtras package >>

Re: [R-SIG-Mac] texi2dvi error "Sweave" and "exams" (Paul Ossenbruggen)

On 20-08-2012, at 20:25, Paul Ossenbruggen wrote: >> I downloaded and installed the big MacTex.pkg and MacTeXtras package >> and checked it out (http://tug.org/mactex/). It works fine. The TeX >> Distribution file (Systems Preferences) has TeXLive-2012 Intel 4 shown with >> a button. >>

Re: [R-SIG-Mac] texi2dvi error "Sweave" and "exams"

See inline. On 19-08-2012, at 21:23, Paul Ossenbruggen wrote: > > I have installed Sweave as recommended. > http://lifeasclay.wordpress.com/tag/sweave/.Placing a test.Rnw file, for > instance, in > "/Library/Frameworks/R.framework/Versions/2.15/Resources/library/utils/Sweave" > ge

Re: [R-SIG-Mac] R 2.15.1 installer with signature (for Mountain Lion)

On 14-08-2012, at 22:39, Simon Urbanek wrote: > On Aug 14, 2012, at 3:49 PM, Berend Hasselman wrote: > >> On 14-08-2012, at 20:10, Simon Urbanek wrote: >> >>> Mountain Lion has been around for a few days and, interestingly, so far no >>> one has comp

Re: [R-SIG-Mac] R 2.15.1 installer with signature (for Mountain Lion)

On 14-08-2012, at 20:10, Simon Urbanek wrote: > Mountain Lion has been around for a few days and, interestingly, so far no > one has complained here, but the default privacy setting prevents unsigned > installer packages from installing. I'm still on 10.6.8 and will wait at least until 10.8.1

Re: [R-SIG-Mac] R.app Data Editor

On 08-04-2012, at 17:59, Holger Schulz wrote: > On the screenshot > > http://www.r-project.org/screenshots/RAqua-scrshot1.jpg > > a window with the R Data Editor is shown. > > How can that be invoked within the R.app? ?edit edit() Berend _

Re: [R-SIG-Mac] Fwd: Re: [R] Package seems to be present but library don't find it

On 03-04-2012, at 20:54, Duncan Murdoch wrote: > On 03/04/2012 1:04 PM, Berend Hasselman wrote: >> On 03-04-2012, at 18:50, Duncan Murdoch wrote: >> >> > This is a message from R-help about installing a package in OSX. The >> > NAMESPACE file contains an e

Re: [R-SIG-Mac] Fwd: Re: [R] Package seems to be present but library don't find it

On 03-04-2012, at 18:50, Duncan Murdoch wrote: > This is a message from R-help about installing a package in OSX. The > NAMESPACE file contains an error, but the user didn't see the error message > when he installed from the Mac GUI. Is R.app missing one of the output > streams? I see the f

Re: [R-SIG-Mac] Sweave.sh, BBEdit, and AppleScript

On 21-03-2012, at 13:48, Christopher David Desjardins wrote: . > if numdocs > 0 then > tell application appName > using terms from application "BBEdit" > set mypath to get file of active document of window 1 > end using terms from >

Re: [R-SIG-Mac] cannit get list of binary packages from the GUI

On 17-03-2012, at 12:06, David Winsemius wrote: > > On Mar 16, 2012, at 7:21 PM, Simon Urbanek wrote: > >> >> On Mar 16, 2012, at 8:55 AM, Prof Brian Ripley wrote: >> >>> On 16/03/2012 12:31, Ken knoblauch wrote: Federico Calboli imperial.ac.uk> writes: > Apologies, I forgot to say

Re: [R-SIG-Mac] finding things in R manuals

On 03-02-2012, at 12:37, Ruth Ripley wrote: > I prefer Adobe reader's directory search. But I don't have the up-to-date set > of pdf manuals on my computer. I can do an easy global search of the html > manuals with text wrangler but I then have to read html. I am thinking I will > have to star

Re: [R-SIG-Mac] Warning in script

On 19-12-2011, at 17:30, Ivan Calandra wrote: > Dear R-Mac users, > > I have a script (http://dl.dropbox.com/u/25185399/Rfunctions_Calandra.R) > containing functions that I source() when I want to use them. > > When I source() it on MacOS 10.6, I get this warning: > In readLines(file) : > lig

Re: [R-SIG-Mac] How to make Mac 64-bit version feature complete?

On 16-12-2011, at 17:20, Simon Urbanek wrote: > On Dec 14, 2011, at 11:38 AM, Timothy Bates wrote: > >> >> On 14 Dec 2011, at 4:24 PM, Adam Strzelecki wrote: In addition, there is no benefit in creating universal binaries, since they are very Darwin-specific and bring no benefit in t

Re: [R-SIG-Mac] Source package compile under OS X Lion

On 14-12-2011, at 17:00, Nils B. Weidmann wrote: > I've been trying to compile the RPostgreSQL package under Lion. Compilation > fails using the most recent Xcode 4.2. Used to work perfectly under Snow > Leopard and Xcode 3.2. > > The error message is > > > make: gcc-4.2: No such file or dire

Re: [R-SIG-Mac] lme4 in Lion?

On 27-09-2011, at 09:15, Berend Hasselman wrote: > > > I am using Lion 10.7.1 and Xcode 4.1. gfortran from gfortran-lion-5666-3.pkg > which installs gfortran into /usr/bin. And R 2..13.1 (2011-07-08). Blas > library is linked to libRblas.dylib I meant linked to libRblas.0

Re: [R-SIG-Mac] lme4 in Lion?

On 26-09-2011, at 22:37, Katherine Hayden wrote: > Simon, > > Thanks very much for your help! >> >> How did you install it? Try >> install.packages("lme4") >> that works for me on Lion without problems. If you have some particular >> problem with it, please let us know. > > I tried that and g

Re: [R-SIG-Mac] Lion and latex

On 01-09-2011, at 21:55, Hadley Wickham wrote: >>> I've tried reinstalling mactex but no luck. pdflatex is available on >>> the path and works when I run it by hand. Any ideas? >> >> After (re)installing MacTeX (2011?) did you run FixMacTeX2011? >> See >> http://www.tug.org/mactex/2011/prefpan

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