Hi Alastair & Christoph,
Here's a possibility to do it with makeNodeLabel( , method = "md5sum").
Suppose tr1 is the tree with support values as its node labels:
x1 <- tr1$node.label
names(x1) <- makeNodeLabel(tr1, "md5sum")$node.label
tr2 is the second tree where you want to assign these new la
Hi Alastair,
It's not an R-based solution, but I've written a small python program to handle
this very task. It takes advantage (and requires the previous installation) of
the DendroPy library written by Jeet Sukumaran and Mark Holder. It should be
able to handle polytomies without a problem
Hi Alastair,
On Feb 24, 2011, at 12:40 PM, Alastair Potts wrote:
> Hi all,
> Me again. I was wondering if anyone had a way to plot the bootstrap values
> from one tree onto another tree. I have a majority rule consensus tree and a
> bootstrap tree, both generated by PAUP, but not identical (
Hi all,
Me again. I was wondering if anyone had a way to plot the bootstrap
values from one tree onto another tree. I have a majority rule consensus
tree and a bootstrap tree, both generated by PAUP, but not identical
(but very close to identical).
I would like to plot the bootstrap values fr
Alastair,
That's indeed the correct work-around. The is because a different code
is used whether the NEXUS file has a TRANSLATE block or not. I'll fix
the bug very soon.
Cheers,
Emmanuel
PS: thanks for the tip on using Figtree.
Alastair Potts wrote on 24/02/2011 14:57:
Hi All,
I think I h
