Re: [R-sig-phylo] adjusted SS in pgls

- R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Daniel Barker http://biology.st-andrews.ac.uk/staff/db60 The University of St Andrews is a charity registered in Scotland : No SC013532

[R-sig-phylo] Seeking list of nucleotide substitution models

the standard sources. Thank you in advance, Daniel -- Daniel Barker http://bio.st-andrews.ac.uk/staff/db60.htm The University of St Andrews is a charity registered in Scotland : No SC013532 ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https

Re: [R-sig-phylo] Why no branch lengths on consensus trees?

]] ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo -- Daniel Barker http://bio.st-andrews.ac.uk/staff/db60.htm The University of St Andrews is a charity registered in Scotland : No SC013532

Re: [R-sig-phylo] Flat likelihood and linear transformation of traits in fitContinuous

, Florian Boucher Laboratoire d'Ecologie Alpine, Grenoble, France -- Daniel Barker http://bio.st-andrews.ac.uk/staff/db60.htm The University of St Andrews is a charity registered in Scotland : No SC013532 [[alternative HTML version deleted]] ___ R-sig

Re: [R-sig-phylo] asymmetric transitions

References: Birnbaum 1962 On the foundations of statistical inference. J Am Stat Assoc 57:269-306, http://www.jstor.org/stable/2281640 with discussion, pp. 307-326, http://www.jstor.org/stable/2281641?seq=1 Yang 2006, Computational Molecular Evolution -- Daniel Barker http://bio.st

Re: [R-sig-phylo] asymmetric transitions

that goes into the matter - and it does so very clearly - is Yang's (2006) 'Computational molecular evolution', in Chapter 4. Hope this is some help. Daniel -- Daniel Barker http://bio.st-andrews.ac.uk/staff/db60.htm The University of St Andrews is a charity registered in Scotland : No SC013532

Re: [R-sig-phylo] Phylogenetic analysis of proportions -

remain, to adapt that to a phylogenetic analysis though. Best wishes, Daniel -- Daniel Barker http://bio.st-andrews.ac.uk/staff/db60.htm The University of St Andrews is a charity registered in Scotland : No SC013532 ___ R-sig-phylo mailing list R-sig