Re: [R-sig-phylo] Can I get coordinates from plot.phylo and not get blank page

HTH Best, Rafael Maia — Junior Fellow, Simons Society of Fellows Rubenstein Lab, Columbia University Department of Ecology, Evolution and Environmental Biology New York, NY http://www.rafaelmaia.net > On Sep 26, 2017, at 9:03 AM, Emmanuel Paradis wrote: > > Hi Elizabeth, > > You can u

Re: [R-sig-phylo] PGLS vs lm

ylogenetic confirmatory path analysis. Evolution 67(2) 378-387 http://onlinelibrary.wiley.com/doi/10./j.1558-5646.2012.01790.x/abstract HTH Abraços, Rafael Maia --- http://www.rafaelmaia.net/ PhD Candidate, Integrated Bioscience University of Akron "A little learning is a dangerous thing; drink

Re: [R-sig-phylo] diversitree with multicore

pi package. If you want to see what my script looks like just let me know and I'd gladly share it with you. Abraços, Rafael Maia --- webpage: http://gozips.uakron.edu/~rm72 "A little learning is a dangerous thing; drink deep, or taste not the Pierian spring." (A. Pope) Grad

Re: [R-sig-phylo] convergence issues with hansen model

t;A","B","C"))) simtree <- sim.history(tree,Q) simtrait<-data.frame(spp=names(simtree$states),state=simtree$states,trait=rnorm(100)) OUwie(simtree,simtrait,model='BMS',simmap.tree=T) Abraços, Rafael Maia --- webpage: http://gozips.uakron.edu/~rm72 "A litt

Re: [R-sig-phylo] convergence issues with hansen model

link: http://onlinelibrary.wiley.com/doi/10./j.1558-5646.2012.01619.x/abstract ) Has anyone tried it out yet? Is there a way of converting SIMMAP trees to the format to be used with the OUwie function? Thanks! Abraços, Rafael Maia --- webpage: http://gozips.uakron.edu/~rm72 "A little le

Re: [R-sig-phylo] multiple traits measured within species

ing, which may be problematic since the traits included are not homologous and the variation between samples within species are not being explicitly modeled in an evolutionary framework. Still, I hope it helps! And best of luck in the project - As a fellow bird-color enthusiast, I find it very int

[R-sig-phylo] chronopl

anch lengths as specified in the wiki? Should I use the S argument? Many thanks for any help! Abraços, Rafael Maia --- webpage: http://gozips.uakron.edu/~rm72 "A little learning is a dangerous thing; drink deep, or taste not the Pierian spring." (A. Pope) Graduate Student - Integrated

[R-sig-phylo] Comparing means under a phylogenetic perspective?

" to address my hypothesis anymore... Any thoughts would be deeply appreciated. Many thanks in advance! Abraços, Rafael Maia --- webpage: http://gozips.uakron.edu/~rm72 "A little learning is a dangerous thing; drink deep, or taste not the Pierian spring." (A. Pope) Graduate St