[R-sig-phylo] Does anyone know why the points command might not correctly plot specified colors?

2013-06-23 Thread Tom Diggs
int where the boxes would eventually align in the proper place. Any ideas? Tom Diggs [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable ar

Re: [R-sig-phylo] Difficulty getting posterior probabilities into ape?

2013-06-19 Thread Tom Diggs
That got it. Thanks so much, Liam. This was amazingly helpful. - Original Message - From: "Liam J. Revell" To: "Tom Diggs" Cc: "Brian O'Meara" ; "mailman, r-sig-phylo" Sent: Wednesday, June 19, 2013 11:50 PM Subject: Re: [R-sig-phyl

Re: [R-sig-phylo] Difficulty getting posterior probabilities into ape?

2013-06-19 Thread Tom Diggs
rying to get up to speed. Thanks for your time and help. - Original Message - From: Brian O'Meara To: Tom Diggs Cc: Jombart, Thibaut ; mailman, r-sig-phylo Sent: Wednesday, June 19, 2013 10:38 PM Subject: Re: [R-sig-phylo] Difficulty getting posterior probabilities in

Re: [R-sig-phylo] Difficulty getting posterior probabilities into ape?

2013-06-19 Thread Tom Diggs
. Has anyone done that before? Thanks, Tom - Original Message ----- From: "Jombart, Thibaut" To: "Tom Diggs" ; Sent: Wednesday, June 19, 2013 12:39 PM Subject: RE: [R-sig-phylo] Difficulty getting posterior probabilities into ape? Hello, Marc Suchard has r

[R-sig-phylo] Difficulty getting posterior probabilities into ape?

2013-06-19 Thread Tom Diggs
Hi all, I was wondering if anyone else has had this problem, and how they addressed it. I've been using BEAST to generate trees, and TreeAnnotator to summarize them. In the output nexus file, the tree plainly has posterior probabilities for each node listed, but when I try to import the trees