Re: [Rdkit-discuss] (no subject)

2014-05-28 Thread chemist69
Dear Toby,   exactly what I was looking for, thanks a lot!   RDKit and its community rock!     Gesendet: Mittwoch, 28. Mai 2014 um 15:45 Uhr Von: "Toby Wright" An: chemis...@gmx.de Cc: "RDKit Discuss" Betreff: Re: [Rdkit-discuss] (no subject) Looking around I see references to a m

Re: [Rdkit-discuss] (no subject)

2014-05-28 Thread Toby Wright
Looking around I see references to a method called Chem.AssignAtomChiralcodes that I couldn't get working so the following method might not be ideal, but it seems to work: mol = Chem.MolFromSmiles('FC(Cl)Br') chiralCentres = Chem.FindMolChiralCenters(mol, includeUnassigned=True) if chiralCentres:

[Rdkit-discuss] (no subject)

2014-05-28 Thread chemist69
Hi RDKitters,   I am preparing a set of compounds for a virtual screening. While the majority are achiral compounds, there are also some racemic structures in the dataset. For the virtual screen, I would like to enumerate the enantiomers from these racemates, e.g. from "CC1N1" -> ["C[C@H]