Re: [Rdkit-discuss] Molfile from smiles

2023-05-04 Thread David Cosgrove
As part of the work on improving the way RDKit handles organometallics that is in the latest release, there is MolOps::cleanUpOrganometallics, which attempts to do the bond transformations in a similar way to that gist. The intention was that this would be part of the default sanitization, but

Re: [Rdkit-discuss] Molfile from smiles

2023-05-04 Thread Santiago Fraga
Good morning Wim Yes, I know that the original smiles has problems with the dative bonds. I am trying to load the molecule and then fix those bonds using this solution: https://gist.github.com/greglandrum/6cd7aadcdedb1ebcafa9537e8a47e3a4 And then generate a new molfile. I