Re: [Rdkit-discuss] unsubscribe....

2021-03-19 Thread Norwid Behrnd via Rdkit-discuss
Did «I tried many different ways» include the page on sourceforge, i.e. https://sourceforge.net/projects/rdkit/lists/rdkit-discuss/unsubscribe -- which equally helps in case the password has to be reset? ___ Rdkit-discuss mailing list Rdkit-discuss@li

Re: [Rdkit-discuss] activate my-rdkit-env from python script

2020-12-02 Thread Norwid Behrnd via Rdkit-discuss
In short: while mechanically possible, how is this better than running conda directly? As a two part MWE shared below, it is possible to redirect e.g., Debian's CPython interpreter into e.g., Miniconda's subfolder containing the other interpreter and launch a script (e.g., loop.py) residing in thi

Re: [Rdkit-discuss] How to center atom labels vertically?

2020-10-21 Thread Norwid Behrnd via Rdkit-discuss
Dear theoz, thanks for reminding about release 2020.09.1.0, less than a day old.[1] Assuming you refer currently using release 2019.03.6 I added to conda by the instruction of conda install -c conda-forge rdkit I would wait a little for an update because a) the relevant repository for conda-for

Re: [Rdkit-discuss] sd file format question

2020-10-02 Thread Norwid Behrnd via Rdkit-discuss
Hi Markus, I'm puzzled for two reasons: + My first guess was that the atom block were incomplete -- not because of the missing charge (even the old V2000 format presented by Dalby et al. J. Chem. Inf. Comput. Sci. 32, 1992, 244--255 allowed charges), but by number of columns. Thus, I passe

Re: [Rdkit-discuss] TIL: Mol objects having varying attributes depending on rdkit imports

2020-09-23 Thread Norwid Behrnd via Rdkit-discuss
Hi Thomas, could your report be already backed by the section titled «Working with 2D molecules: Generating Depictions» of the upper half of page https://www.rdkit.org/docs/GettingStartedInPython.htm about the 2020.03.1 documentation with the following example? 8>< begin snippet --- >

[Rdkit-discuss] Missing atom indices in the last structure

2020-09-22 Thread Norwid Behrnd via Rdkit-discuss
Starting with lists consisting of a compound identifier, an explicit space, and a SMILES string, I would like to generate illustrations about these structures including RDKit's atom indices. What is puzzling to me is that consistently the last entry / compound list is converted into a structure re