Re: troublesome unit cell

2004-10-18 Thread Jacco van de Streek
Whitfield, Pamela wrote: I've come across a unit cell that seems to give alot of software a headache when generating the powder patterns. I've tested 6 software packages with this (including commercial) and found only a 50% success rate in generating a good pattern with correct relative intensi

Re: troublesome unit cell

2004-10-18 Thread Whitfield, Pamela
Jacco I didn't actually use these cif files for my simulations, I entered the data by hand (including fractions where the software would take it). :-) The cif data is just there for other people's convenience - different powder software like different cif file formats anyhow. In any case, if th

Re: troublesome unit cell

2004-10-18 Thread Jacco van de Streek
Whitfield, Pamela wrote: The problem also occurred in a program that would take fractional coordinates, so that's not the only snag. I suggested another one: From: Jacco van de Streek - The matrices representing the space-group operators are no longer diagonal, and the distinction between R*h and

RE: troublesome unit cell

2004-10-18 Thread Whitfield, Pamela
> - The matrices representing the space-group operators are no longer > diagonal, and the distinction between R*h and h*R (where R is the > rotation matrix and h is the reciprocal space vector [h,k,l]) becomes > important when calculating systematic absences. This does make sense. Many of the pro

Re: troublesome unit cell

2004-10-18 Thread Hewat Alan
> The cell is in space group P3112 > There aren't even any structures with this space group in the ICSD > (not even the other enantiomorph P3212) Hmm, I found 24 entries in ICSD for P3122, especially minerals such as Muscovite 3T but also things like V6C5 and Ag2HPO4 but not Li3MnNiCoO6 Cenzual,

Re: troublesome unit cell

2004-10-18 Thread Whitfield, Pamela
Alan I agree - I found them as well, but this particular P3112/P3212 group is very rare. Given that software tends to deal with space group interpretation on a case-by-case basis it does mean that problems can be specific to a particular group - especially if it hasn't been tested before. Some so

Re: troublesome unit cell

2004-10-18 Thread Von Dreele, Robert B.
Pam, I hope that when you used GSAS you entered (as per instructions) "p 31 1 2" and not "p3112". Bob R.B. Von Dreele IPNS Division Argonne National Laboratory Argonne, IL 60439-4814 -Original Message- From: Whitfield, Pamela [mailto:[EMAIL PROTECTED] Sent: Monday, October 18, 2004 12:

Re: troublesome unit cell

2004-10-18 Thread Whitfield, Pamela
Bob I did indeed - I tried GSAS and it behaves itself. Pam Dr Pamela Whitfield CChem MRSC Energy Materials Group Institute for Chemical Process and Environmental Technology Building M12 National Research Council Canada 1200 Montreal Road Ottawa ON K1A 0R6 CANADA Tel: (613) 998 8462 Fax:

RE: troublesome unit cell

2004-10-18 Thread alan coelho
Pam, As a developer and someone who uses other software to test against, I have been following the discussion with interest. This is a complex area and it goes to show the importance of having a few programs if only for testing purposes. I am puzzled by your cif data however as I cant get past ve

RE: troublesome unit cell

2004-10-18 Thread Whitfield, Pamela
AlanI'm afraid that the cif files weren't overly good ones - I don't normally use them.  For the R-3m the Li 1/2 fractional coordinate is for the z, not y.  The structures are related by a Ö3a x Ö3a relationship with Z = 3 for the R-3m and Z = 9 for the P3112.Here are the STR files.  You can

RE: troublesome unit cell

2004-10-18 Thread Von Dreele, Robert B.
Alan, One of your operators is a typo. "-x+y, y, -z+1/3" should be " Y-X Y 1/3-Z" Bob From: alan coelho [mailto:[EMAIL PROTECTED] Sent: Mon 10/18/2004 3:16 PM To: [EMAIL PROTECTED] Pam, As a developer and someone who uses other software to test a

RE: troublesome unit cell

2004-10-18 Thread Whitfield, Pamela
Bob I worked through all of the various operators used in the programs I have (including Topas) and they are equivalent in each case. Topas works for this one just as well as GSAS. Pam Dr Pamela Whitfield CChem MRSC Energy Materials Group Institute for Chemical Process and Environmental Technol

RE: troublesome unit cell

2004-10-18 Thread Von Dreele, Robert B.
Pam, Actually you're right! WRT that operator - they are the same. My goof. Bob From: Whitfield, Pamela [mailto:[EMAIL PROTECTED] Sent: Mon 10/18/2004 3:50 PM To: '[EMAIL PROTECTED]' Bob I worked through all of the various operators used in the programs I have

RE: troublesome unit cell

2004-10-18 Thread alan coelho
checking cheers alan     -Original Message-From: Whitfield, Pamela [mailto:[EMAIL PROTECTED] Sent: Monday, October 18, 2004 10:32 PMTo: '[EMAIL PROTECTED]'Subject: RE: troublesome unit cell AlanI'm afraid that the cif files weren't overly good ones - I don

RE: troublesome unit cell

2004-10-18 Thread alan coelho
Bob and Pam, Hope others on the list dont consider this topic as spam but the checking across programs are a critical part of developent. and a thanks by myself to the both of them for hand checking the equivalent poistions - no wonder Bob made a goof. regards alan -Original Message- F

RE: troublesome unit cell

2004-10-18 Thread Whitfield, Pamela
lan coelho [mailto:[EMAIL PROTECTED]Sent: October 18, 2004 5:36 PMTo: [EMAIL PROTECTED]Subject: RE: troublesome unit cell Pam,   I looked at your INP file and there was a problem in regards to how atomic coordinates were defined. As you know TOPAS uses computer algebra with a

RE: troublesome unit cell

2004-10-18 Thread alan coelho
out for "apparent" discrepencies. alan -Original Message-From: Whitfield, Pamela [mailto:[EMAIL PROTECTED] Sent: Tuesday, October 19, 2004 12:05 AMTo: '[EMAIL PROTECTED]'Subject: RE: troublesome unit cell Alan   In the original simulations I used