Hi Carol,
I believe the current version is 1.3. Version 0.1.19 is quite dated.
Best wishes,
Tommy
From: carol white mailto:wht_...@yahoo.com>>
Reply-To: carol white mailto:wht_...@yahoo.com>>
Date: Wednesday, 9 March 2016 12:48:00
To: Samtools Help
mailto:samtools-help@lists.sourceforge.net>>
S
Hi,Is it possible to output samtools sort in sam format? According to the
documentation, yes but does it depend on the version (0.1.19)? I get -O not
recognized.
Cheers,
Carol
--
Transform Data into Opportunity.
Accelera
Hi Yuzhang,
I think you miscalculated the permutations.
Here VCF specs with the answer to your question:
http://samtools.github.io/hts-specs/VCFv4.3.pdf
Off the top of my head, answer is that PLs are (R is REF and A is ALT):
RR,RA1,RA2,RA3,A1A1,A1A2,A1A3,A2A3,A2A2,A3A3
I could be wrong about th
Hi dear:
Thanks for your attention.I got some problems when using samtools.
The VCF file contain an entry:
Supercontig_1.1 104341 . G A,T,C 126 .
DP=9;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-45 GT:PL:DP:GQ
1/1:159,18,0,158,8,155,158,8,153,155:8:33
There are 3 ALTs
