Re: [SIESTA-L] transiesta calculation+temperature

2016-09-20 Por tôpico Nick Papior
You may find some information in the original transiesta paper and in the pre-print of the next transiesta release: http://link.aps.org/doi/10.1103/PhysRevB.65.165401 https://arxiv.org/abs/1607.04464 If you want more information you have to read about complex analysis and numerical integration. G

Re: [SIESTA-L] transiesta calculation+temperature

2016-09-19 Por tôpico anita dameh
Dear Nick, thank you so much for your kind reply. Can you suggest me references where I can find appropriate description of contours and the parameters can affect them in details. I think I need to learn more about them. Bests, Anita On 18 September 2016 at 15:11, Nick Papior wrote: > Please

Re: [SIESTA-L] transiesta calculation+temperature

2016-09-18 Por tôpico Nick Papior
Please check your input parameters. With changing temperature and bias one should check the input parameters for the contours. Note that for any version of transiesta in version 4.1 and after, the contours are handled more consistently with changing temperature. 2016-09-11 8:12 GMT+02:00 anita da

[SIESTA-L] transiesta calculation+temperature

2016-09-10 Por tôpico anita dameh
Dear Transiesta users, I am trying to study the temperature effect on the conductance of my devices at different bias. At room temperature the transiesta calculation converged correctly but in higher values, it did not converge. How can I solve the problem? Regards, Anita

[SIESTA-L] transiesta calculation dos not start

2016-04-12 Por tôpico azar ostovan
Dear Transiesta users I tried to do transiesta calculation for the attached input file but there is a problem. The Transiesta calculation doesn’t start and all the scf iterations go for siesta run at the end the job terminate without making the .TSHS file. I don’t know what is wrong in my input

Re:[SIESTA-L] transiesta calculation+%block kgrid_Monkhorst_Pack

2015-11-17 Por tôpico 宁文果
horst_Pack > 1 0 0 0.0 > 0 1 0 0.0 > 0 0 100 0.0 > %endblock kgrid_Monkhorst_Pack > == > > Wenguo Ning > > > > > ------ Origin message -- > >From:"azar ostovan" > >To:siesta-l@uam.es > >Subject:[SIE

Re: [SIESTA-L] transiesta calculation+%block kgrid_Monkhorst_Pack

2015-11-17 Por tôpico azar ostovan
%endblock kgrid_Monkhorst_Pack > == > > Wenguo Ning > > > > > -- Origin message -- > >From:"azar ostovan" > >To:siesta-l@uam.es > >Subject:[SIESTA-L] transiesta calculation+%block kgrid_Monkhorst_Pack > >Date:2015-1

Re: [SIESTA-L] transiesta calculation+%block kgrid_Monkhorst_Pack

2015-11-16 Por tôpico 宁文果
kgrid_Monkhorst_Pack == Wenguo Ning -- Origin message -- >From:"azar ostovan" >To:siesta-l@uam.es >Subject:[SIESTA-L] transiesta calculation+%block kgrid_Monkhorst_Pack >Date:2015-11-17 02:16:33Dear, transiesta

[SIESTA-L] transiesta calculation+%block kgrid_Monkhorst_Pack

2015-11-16 Por tôpico azar ostovan
Dear, transiesta users When we run the transiesta calculation, the %block kgrid_Monkhorst_Pack a 0 0 0.0 0 a 0 0.0 0 0 a 0.0 %endblock kgrid_Monkhorst_Pack Must be the same as the one ran in siesta relaxtion? Or it could be different. Kind regards Azar ostovan

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-18 Por tôpico Seyed Mohammad Tabatabaei
I am thankful indeed. On 11/18/14, Nick Papior Andersen wrote: > 2014-11-18 18:05 GMT+00:00 Seyed Mohammad Tabatabaei : > >> I am deeply thankful for your sincere support. Hopefully, my last >> questions are: >> >> You said: >> "Yes, the idea as I said is that you want the electrodes to behave "a

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-18 Por tôpico Nick Papior Andersen
2014-11-18 18:05 GMT+00:00 Seyed Mohammad Tabatabaei : > I am deeply thankful for your sincere support. Hopefully, my last > questions are: > > You said: > "Yes, the idea as I said is that you want the electrodes to behave "as > much as bulk as you can". > So I would put in a big vacuum" > > I thi

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-18 Por tôpico Seyed Mohammad Tabatabaei
I am deeply thankful for your sincere support. Hopefully, my last questions are: You said: "Yes, the idea as I said is that you want the electrodes to behave "as much as bulk as you can". So I would put in a big vacuum" I think you mean a "big vacuum" full of buffer unit cells at the two ends of

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-18 Por tôpico Nick Papior Andersen
2014-11-18 14:40 GMT+01:00 Seyed Mohammad Tabatabaei : > Dear Nick, > > I am very happy that you are here and thank you for your guidance. I > would be indebted to you if you help me better understand the point. I > have tried to put my questions in a yes/no format so that it takes you > a short t

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-18 Por tôpico Seyed Mohammad Tabatabaei
Dear Nick, I am very happy that you are here and thank you for your guidance. I would be indebted to you if you help me better understand the point. I have tried to put my questions in a yes/no format so that it takes you a short time to answer them. In case I was wrong or misunderstood, I would b

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-18 Por tôpico Nick Papior Andersen
2014-11-17 8:31 GMT+00:00 Seyed Mohammad Tabatabaei : > Dear SIESTA Users, > > I have a few conceptual questions about TranSIESTA and would be really > grateful if you help me with them. In fact, the answer to these > questions is quite important for my calculations. I have used TranSIESTA > to st

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-18 Por tôpico Seyed Mohammad Tabatabaei
Dear Dr Verma, Thanks for your time and consideration. I am doing that by increasing the length of the third lattice vector which is along the z direction. The original LatticeVectors block is: %block LatticeVectors +16.50 +0.00 +0.00 +0.00 +8.00 +0.00

Re: [SIESTA-L] TranSIESTA Calculation

2014-11-17 Por tôpico Dr. Mohan L. Verma
Dear Mohammad I am not getting how you are increasing  the required vector length in z direction. Go thought the output file keenly, may be some difference  (if any ) will  be there. Can you please send me your fdf file for  first two cases. Dr Mohan L Verma Prof & Head Department of Applied P

[SIESTA-L] TranSIESTA Calculation

2014-11-17 Por tôpico Seyed Mohammad Tabatabaei
Dear SIESTA Users, I have a few conceptual questions about TranSIESTA and would be really grateful if you help me with them. In fact, the answer to these questions is quite important for my calculations. I have used TranSIESTA to study the current in an 8-AGNR system. My system consists of 16X7=11

Re: [SIESTA-L] Transiesta calculation

2010-01-11 Por tôpico zhiyong wang
Dear Mehmet Topsakal: Thank you very much for reply! I will follow your advice! zhiyong

Re: [SIESTA-L] Transiesta calculation

2010-01-11 Por tôpico Mehmet Topsakal
You should check the numbers at the end of your fdf file. If i were you, i would modify # LEFT ELECTRODE TS.HSFileLeft ./elec.fast.TSHS TS.ReplicateA1Left1 TS.ReplicateA2Left1 TS.NumUsedAtomsLeft 03 TS.BufferAtomsLeft0 # RIGHT ELECTRODE TS.HSFileRight ./elec.fast.TSHS TS.Replicate

Re: [SIESTA-L] Transiesta calculation

2010-01-11 Por tôpico zhiyong wang
Dear SIESTA users: I also get the following error: Done ERROR: lastoL,NGL2 0 13 26 39 15 ERROR: Unexpected no. orbs. in L elec. ERROR STOP from Node:0 I am looking forward to your reply! my input.fdf is attached

[SIESTA-L] Transiesta calculation

2010-01-10 Por tôpico Zubaer Hossain
Dear SIESTA users, In a TRANSIESTA calculation I get the following error: "ERROR: weightDM: nc<,NGL+NGR" Could anyone please tell me what are the input parameters that control the characteristics of these variables? [Looking at the files m_ts_scattering.F, I find that: m_ts_scattering.F: in