[spctools-discuss] Re: Problem for TPP handle the peptide ID in MASCOT without homology score threshold

2009-05-14 Thread Brian Pratt
Hi Jamie, Could be a software defect - go ahead and email me the (zipped!) input and output files for the mascot converter and I'll have a look at it. Also include notes pointing me to specific examples of errors in that output file. Brian -Original Message- From: spctools-discuss@goog

[spctools-discuss] Re: convert pepXML to a csv/tsv file via command line

2009-05-14 Thread Greg Bowersock
You'll need to modify the scripts a little, since my TPP directory (/home/TPP/tpp) is hardcoded in the scripts, along with a couple of other minor things. On the protein script, depending on what all you want displayed you'll need to modify things there also. Both of the scripts below will print ou

[spctools-discuss] Letter of Support Request

2009-05-14 Thread David Shteynberg
Dear TPP Users, Last year many of you were kind enough to write excellent letters of support for our grant application to maintain funding for the Trans-Proteomic Pipeline. While this grant is still under review, we have been strongly encouraged to apply for funding for the TPP through the "Grand