Hello:
I collected some data from LTQ XP and converted them to mzXML by ReAdw.
I noticed there is no precursor charge information, unlike the data from LTQ
Orbitrap.
Nevertheless, it seems X!tandem can still get it right. So i become very
curious how it handles the charge.
Does anyone know?
When a precursor charge is not known, the logic that is used to
analyze the data is as follows. If there are no peaks above the
precursor m/z then the spectrum is assumed to be 1+ and analyzed as
such. If there are peaks above the precursor m/z then the precursor
ion is assumed to be multiply