Re: [spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-02 Thread Jimmy Eng
Ron, Here's a compiled Mascot2XML.exe binary for you: http://tinyurl.com/24a8jna Regarding the errors you're seeing yourself, I'd just type 'make' in the 'src' directory in your msys/mingw window. I don't know how to target building just a specific binary but hopefully another developer can

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-02 Thread Ronald W. Finnegan
I downloaded the MascotConverter.cxx rev 4945 checked in by Jimmy on 4-15-10 and copied it to this location within the TPP source distribution: C:\TPP431src\tpp\src\Parsers\Algorithm2XML\Mascot2XML\ I am getting these errors when I run the makefile command: lnt...@nimh-lntvm1 /c/tpp431src/tpp/sr

[spctools-discuss] OMSSA and TPP pipeline execution ...

2010-07-02 Thread Jagan Kommineni
Dear All, I have created decoy database for the SwisPlot database using decoyFASTA of the TPPDistribution and run the following TPP commands after the omssa search with decoy database and here is the output on STDOUT ... --- [r...@compute-3-0 run-on-compute]# /