The most up to date documentation is in the usage text of the conversion
application msconvert (read by running it with no arguments). The first section
is:
Usage: msconvert [options] [filemasks]
Convert mass spec data file formats.
Return value: # of failed files.
Options:
-f [ --filelist
ProteoWizard seems to have poor documentation, because I don't see how
to do it.
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>fwiw, MzXML2Search does support mzML input files too.
So let me get this straight: The program is named MzXML2Search, and
when entering the command to see its usage, it says it expects
*.mzXML, and makes NO mention of mzML.can support mzML.
I think an update to its name and/or documentat
fwiw, MzXML2Search does support mzML input files too.
On Wed, Jul 7, 2010 at 11:24 AM, Jesse J wrote:
> mzML is the new format that should be used, but I haven't seen any
> programs out there that will convert mzML into mgf and ms2, like
> MzXML2Search does with mzXML.
>
> With some help from my
Hi Jesse,
All ProteoWizard tools and clients can read/write the decent open formats on
any platform:
http://proteowizard.sourceforge.net/technical/formats/index.html
PKL, DTA, and mzData (which is cursed by dialect issues) are the only missing
formats I'm aware of.
-Matt
On 7/7/2010 1:24 PM
mzML is the new format that should be used, but I haven't seen any
programs out there that will convert mzML into mgf and ms2, like
MzXML2Search does with mzXML.
With some help from my professor, I've expanded ms-msrun to support
mzML and thus be able to convert mzML into mgf or ms2, but I'm
curio
