fwiw, MzXML2Search does support mzML input files too.

On Wed, Jul 7, 2010 at 11:24 AM, Jesse J <firstblackphan...@gmail.com> wrote:
> mzML is the new format that should be used, but I haven't seen any
> programs out there that will convert mzML into mgf and ms2, like
> MzXML2Search does with mzXML.
>
> With some help from my professor, I've expanded ms-msrun to support
> mzML and thus be able to convert mzML into mgf or ms2, but I'm
> curious: is there any other program out there that does this?
>
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