Re: [spctools-discuss] TPP on the Cloud

2011-10-06 Thread Joseph Slagel
Simon, Your correct, we've been quite busy with some new features in TPP to leverage cloud computing, and in particular Amazon Web Services. I'm probably the best person to ask as I've been working with it the most. My first question is what in particular are your interests/needs? as we have a

Re: [spctools-discuss] TPP Tutorial .out vs .tandem files?

2011-10-06 Thread Luis Mendoza
Hi Chris, Which tutorial are you referring to? Please also note that you must set the "pipeline type" to "Sequest" on the home page if you wish to convert .out files to pepXML; leaving it set to "Tandem" will tell the software to only look for files of that type. Cheers, --Luis On Thu, Oct 6, 20

[spctools-discuss] TPP Tutorial .out vs .tandem files?

2011-10-06 Thread Chris L
Dear all, I am attempting the tutorial steps for TPP. The tutorial instructed me to choose .out files to convert to pepXML; however, the TPP shows it cannot detect compatible file (.tandem) I am wondering whether I am suppose to convert .out files into .tandem files, or should I try downloading .t

Re: [spctools-discuss] Problems converting wiff to mzML

2011-10-06 Thread David Shteynberg
Hi Mia, I noticed that there appear to be some spaces in the mzML file msconvert generated: c:/Inetpub/wwwroot/ISB/data/potato/formats/ Stensballe_PotatoGS-Potato Gel Slice 2.mzML Can you see this file under windows explorer if you navigate to that directory? Does the file have content (or non-z

[spctools-discuss] problems with ProteinProphet

2011-10-06 Thread Aline Lopes
Dear everybody, I am a new user of TPP. I have been some problems with ProteinProphet. The follow message appear, when the running is finished: * c:/Inetpub/wwwroot/ISB/data/Plaquetas/teste.pep.shtml [ View ] * c:/Inetpub/wwwroot/ISB/data/Plaquetas/teste.prot.shtml [ Unreadable! ] The Pe

[spctools-discuss] Problems converting wiff to mzML

2011-10-06 Thread Mia Larsen
Hi SPC-group I have recently installed TPP v 4.5 and the program works fine with the test-dataset I got from the TPP-course held as a HUPO 2011 Satellite Workshop. I got a wiff-file of my sample from the AB-Sciex demo-lab and now want to test it with TPP. However when I want to convert the wiff-