Hi Chris,
Which tutorial are you referring to?  Please also note that you must set the
"pipeline type" to "Sequest" on the home page if you wish to convert .out
files to pepXML; leaving it set to "Tandem" will tell the software to only
look for files of that type.
Cheers,
--Luis


On Thu, Oct 6, 2011 at 5:48 PM, Chris L <li...@uci.edu> wrote:

> Dear all,
>
> I am attempting the tutorial steps for TPP. The tutorial instructed me
> to choose .out files to convert to pepXML; however, the TPP shows it
> cannot detect compatible file (.tandem) I am wondering whether I am
> suppose to convert .out files into .tandem files, or should I try
> downloading .tandem files somewhere? Any input is appreciated. Thank
> you.
>
> Sincerely,
> Chris L
>
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