Hi Julia,
Certainly it is possible that those are false IDs, but it depends as
it often does on other factors.
Did you find other confidently IDed peptides that are not
Phosphorylated? What is the relative sizes of the positive and
negative mixture distributions in the data? Do you expect that
Eileen,
I don't see this problem with my test dataset but that doesn't mean
much because it's a different dataset running on a different system.
If you send me your files (zip up all of the interact* files and email
them to me), I'll take a look. That XPressCGIProteinDisplay isn't
something I wro
Thank Patrick Pedrioli; he was the one who fixed the bug!
On Fri, Oct 21, 2011 at 10:59 AM, Ping wrote:
> Thank you s much Jimmy. It works now!!
>
> On Oct 20, 2:18 pm, Jimmy Eng wrote:
>> There's been a fix checked in to the Sashimi subversion repository
>> that addresses a known issue with
Hey Guys,
I have a question regarding identification of phosphopeptide using
TPP. I got a data using an LTQ-XL (using CID) and I ‘ve searched using
MASCOT search engine (phosphorylation as a variable modification in S/
T/Y) . I found more than 50 phosphorylated proteins however when I
use TPP to
Thank you s much Jimmy. It works now!!
On Oct 20, 2:18 pm, Jimmy Eng wrote:
> There's been a fix checked in to the Sashimi subversion repository
> that addresses a known issue with XPressPeptideParser. Hopefully that
> fix addresses the issue you're seeing. If not, let me know.
>
> Since yo
Hi Vishal and all,
I am doing step 7: "Visualize LC-MS/MS data using Pep3D " in TPP Demo
2009 (http://tools.proteomecenter.org/wiki/index.php?
title=TPP_Demo2009)
a) I had C:\tmp to begin with
b) I am using firefox. I tried to open it with IE6 and encountered the
same problem.
c) I did not have use
