Eileen, I don't see this problem with my test dataset but that doesn't mean much because it's a different dataset running on a different system. If you send me your files (zip up all of the interact* files and email them to me), I'll take a look. That XPressCGIProteinDisplay isn't something I wrote so have low expectations that I can identify and fix the problem you're seeing. :)
- Jimmy On Thu, Oct 20, 2011 at 2:14 PM, Eileen Yue <y...@ohsu.edu> wrote: > Hi Jimmy: > After I tested one fraction, I run TPP for my 12 fraction together to analyze > the xpress and Asap ratio. They run smoothly and completed after two days. > > There is similar problem like before but without any error information: I > clicked the protein xpress ratio to see the all the peptide xpress ratio > information, they only showed: > > <-- TPP v4.5 RAPTURE rev 0, Build 201109211427 (MinGW) --> > XPressCGIProteinDisplay (TPP v4.5 RAPTURE rev 0, Build 201109211427 (MinGW)) > XPRESS ratio in ProteinProphet: light:heavy (1.29 ± 0.46) > sp|A0AV96|RBM47_HUMAN 6 entries used 1.29:1.00 > 1.00:0.77 > --------------------------------------------------------------------------------c:/Inetpub/wwwroot/ISB/data/ISL1026/isl_er/interact.pep.xml > -------------------------------------------------------------------------------- > Click RELOAD in your browser to re-evaluate ratio if changes have been made > to the XPRESS quantitation in any of the entries above. This will update what > you see in the current ratio just above. > To accept the current ratio back to ProteinProphet, click on the button below. > > > But when I checked the asap ratio, everything is fine. > > Do you know how I solve this problem? > > Thank you > Eileen > > > ________________________________________ > From: spctools-discuss@googlegroups.com [spctools-discuss@googlegroups.com] > On Behalf Of Eileen Yue [y...@ohsu.edu] > Sent: Tuesday, October 18, 2011 3:22 PM > To: spctools-discuss@googlegroups.com > Subject: RE: [spctools-discuss] ASAP Ratiopeptideparse.exe-application error > > Hi Jimmy: > Thank you so much and it works! I just tried one fraction and it works > perfectly! > > So appreciate all of you for your kind help! > > Eileen > ________________________________________ > From: spctools-discuss@googlegroups.com [spctools-discuss@googlegroups.com] > On Behalf Of Jimmy Eng [jke...@gmail.com] > Sent: Tuesday, October 18, 2011 1:41 PM > To: spctools-discuss@googlegroups.com > Subject: Re: [spctools-discuss] ASAP Ratiopeptideparse.exe-application error > > Eileen, > > Can you download the following executable and update your TPP binary > with this one: > > http://proteomicsresource.washington.edu/dist/XPressPeptideUpdateParser.cgi > > The files should go in c:\inetpub\tpp-bin\. Let me know if this fix > does not work for the problem you're experiencing. > > - Jimmy > > On Tue, Oct 18, 2011 at 10:51 AM, Eileen Yue <y...@ohsu.edu> wrote: >> Hi Joe: >> I did convert mzml files. the problem is that the error showed up when I >> click the xpress ratio in prot.xml files. If I open the pep.shtml and click >> the xpress ratio, it is fine and showed me the chromatrography information >> for this peptide. This will not work if I open the prot.shtml and click the >> xpress ratio. The ASAP ratio is fine and I can open them and see the >> chromatography information. >> >> Thanks >> Eileen > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-discuss@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-discuss@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-discuss@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
