Re: [spctools-discuss] Internal Server Error

2012-12-05 Thread Vishal Swaroop
Hi Bill, First make sure, apache is configured... you can try http://localhost:your port. Check if perl is installed, may be you can try any test script... Finally, check you apache configuration file here is mine which works perfectly fine... refer Begin settings for the Trans Proteomic

Re: [spctools-discuss] Internal Server Error

2012-12-05 Thread Joseph Slagel
Another thing to check is the location you have perl installed. It might be that the directive in tpp_gui.pl isn't correct. Take a look at the top of the file C:\Inetpub\tpp-bin\tpp_gui.pl. Does the first line match where you perl executable is? On Tue, Dec 4, 2012 at 2:34 PM, Vensel, William

[spctools-discuss] Unable to view Pep3D

2012-12-05 Thread Vensel, William
I downloaded the TPP Demo2009 and converted the RAW files to mzML using Msconvert which generated two files: * c:/Inetpub/wwwroot/ISB/data/Tandem/OR20080317_S_SILAC-LH_1-1_01.mzML [

Re: [spctools-discuss] Re: Problem with reading mzXML file with Sequest input

2012-12-05 Thread Jimmy Eng
Chris, Try setting the msms_run_summary base_name and search_summary base_name to the name of the mzXML file. In your example below, have both base_name=e120823DC_EC_04and make sure e120823DC_EC_04.mzXML exists in the same directory as the interact.pep.xml. See if that works to allow you to