[spctools-discuss] TPP 4.6.1 problems: ions2 / Lorikeet and iProphet (iModelParser.cgi) plots

2012-12-12 Thread Ludovic
Dear Group, I have recently tried to install the TPP4.6.1 in an Ubuntu server system (Ubuntu 10.04.4), following the instructions from the wiki page. The install seems to have gone fine. All the TPP executable run ok (including the InterProphetParser and PTMprophetParser). However, I

[spctools-discuss] TPP on Amazon E2C. Local use?

2012-12-12 Thread Brian Hampton
I understand that the machine images for running TPP on the amazon cloud are based on Ubuntu. Can these fully functioning machine images be downloaded and installed for use locally? If so this would be a way to provide the TPP user base with a fully functioning Ubuntu Linux pipeline such as

Re: [spctools-discuss] TPP on Amazon E2C. Local use?

2012-12-12 Thread Joseph Slagel
From my understanding not really. Its possible to download the AMI images (they are stored in S3 and a public so that others can use them) but they are encrypted and are only decryptable if you have the AWS private key used to bundle them. If you had the key and had downloaded the files it is

[spctools-discuss] Error when running XPRESS

2012-12-12 Thread Carlos
Dear all I am trying to analyze my dimethylation data using XPRESS tool in TPP but with no success so far... I did two XTandem searches for my mzXML files: one for light dimethyl (+28@N-terminus and @K) and another one for heavy (+34@N-terminus and @K) and merged them using the 'Analyze

Re: [spctools-discuss] Error when running XPRESS

2012-12-12 Thread Jimmy Eng
Carlos, Unless I don't understand how XPRESS currently runs, I don't believe it will work on your separate light and heavy searches. This doesn't explain the failure to run error but it's worth mentioning up front. XPRESS expects a variable modification to denote the difference between your