Think I accidentally replied to author install of to the list... apologies
if this ends up a double post.
The script below extracts the following correct-looking m/z intensity
values from the base64 string on stock perl v5.10.1 on ScientificLinux 6.3
64-bit.
300.282879284137
61862.0788574219
3
Jimmy,
Thanks for that info. Sounds great. I'll proceed based on the knowledge
that'll be available.
Cheers,
DT
On Monday, April 1, 2013 4:43:40 PM UTC-5, Jimmy Eng wrote:
>
> Dave,
>
> Mike Hoopmann implemented a nice fix for searches using small bins. The
> sources current in Comet SourceF
Greg,
Sorry about that - I'll have it fixed tomorrow and contact you off list.
The CPFP daemons are/were quite flaky, hence they break if any of various
dependencies have any issue / the OS decides to upgrade and restart them
etc. Am working on this, with help from others.
Will get back to you
Hi Dave,
Thanks for following up. I had tried to use the CPFP demo server for a
test with some of our data. Unfortunately I never made it past the search
steps in the workflow. I just logged in and the two samples I'm trying to
compare still report the status "SEARCHES QUEUED/RUNNING" and so
Dave,
Mike Hoopmann implemented a nice fix for searches using small bins. The
sources current in Comet SourceForge trunk should be fully functional. One
new parameter entry is titled "use_sparse_matrix" (see Comet version
2013.01 params in link below) which controls whether or not the sparse
mat
Hi Philip,
Sorry to drag up an old thread, but I wondered if you had info about the
effects on results of limiting Comet memory usage by using a large bin, vs
using the 64-bit binary and small bin?
We are primarily working with QExactive data here. I was thinking of adding
Comet to our pipeli
Hi Greg,
Just a quick note that if you happen to have tried SINQ on CPFP and have
had any problems with the demo server I apologize. I had been away for a
while and not really monitoring it, so may not have worked for you. Am
going to spend some time on CPFP soon.
If you happen to try it on CP
