The other alternative is to run XPRESS in Label-free mode. For peaks where
it can extract intensities, it will report two results: one for the
integrated area with corresponding scan range, and one for the maximum peak
intensity along with the scan number of that peak. You can view and export
Both worked! Thanks so much!
On Thursday, October 1, 2020 at 10:55:24 AM UTC-5 jwi...@gmail.com wrote:
> It might also be worth trying the --ignoreUnknownInstrumentError flag in
> your mzML command.
> We had a similar problem with a new Thermo instrument where it wasn't
> supported yet, and
I am a using TPP v5.2.0 Flammagenitus to analyze label free data
generated on a Thermo QExactive machine. I want to perform LFQ, is there
anyway to get Intensity values from the TPP. I am not sure about using
StPeter since it is based on spectral counting. How can I perform LFQ in
TPP ?
--
Hello Jimmy,
Thanks for replying. Firstly, I am not sure about semi-tryptic search so I
will set it to "no". Secondly, whenever I chose "tandem.params" file it
automatically picks up the "isb_default_input_kscore.xml" rather
than "isb_default_input_native.xml" as the default parameter. I do
