e access to files >2GB to test with.
>
>
> On Fri, Oct 9, 2015 at 11:09 AM, Daniel Hyduke <danielhyd...@gmail.com>
> wrote:
>
>> I've recently noticed some failures when using comet and xtandem! from
>> TPP to search some centroided DDA files generated by qtofpeakpicker. T
and Comet.
>> Anyways, something needs to be fixed with qtofpeakpicker to write correct
>> >2GB mzXML files. Minimally it needs to be a 64-bit binary. A feasible
>> but poor workaround is to simply run indexmzXML on each file.
>>
>> - Jimmy
>>
>>
>>
I've recently noticed some failures when using comet and xtandem! from TPP
to search some centroided DDA files generated by qtofpeakpicker. These
failures were all associated with files > 2GB. I was able to reduce the
file size by increasing the threshold which then lead to readmzXML, tandem,
So, I've been interested in using the 10,000 human protein assay library
from swath atlas
https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/GetDIALibs. One
thing that I noticed is that for some assays the peptide sequence is not
present in one, or more, of the proteins associated with the
spectrum
names based on the info in spectrumNativeID, it is clearly getting it wrong
on your input example. If you can share one of the problem input files I
can fix it.
Thanks,
-David
On Fri, May 15, 2015 at 2:57 PM, Daniel Hyduke daniel...@stemcentrx.com
javascript: wrote:
I'm trying
I'm trying to run iProphet on some myrimatch (version 2.2.140) results and
the call to xinteract crashes at the PeptideProphetParser stage. Using
gdb, I've determined that the crash is related to the intermediate xml
generated by InteractParser. I've encountered this problem with TPP-4.8.0
